miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 5' -56.2 NC_005887.1 + 40981 0.66 0.595494
Target:  5'- cUCGGUgCGCGCgcgGUAGcccuUCGGCGGCu -3'
miRNA:   3'- aAGCUA-GCGCGa--CGUCu---GGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 23469 0.71 0.281567
Target:  5'- aUCGA-CGCGCUGCugcGGCUGccaGCGGCAg -3'
miRNA:   3'- aAGCUaGCGCGACGu--CUGGC---UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 4696 0.72 0.253747
Target:  5'- cUUGAUCGCGCcgGCGGccACCGGCGccGCGg -3'
miRNA:   3'- aAGCUAGCGCGa-CGUC--UGGCUGC--UGU- -5'
28119 5' -56.2 NC_005887.1 + 14738 0.77 0.117116
Target:  5'- -cCGAUCGUGCgggGCAGcgucgaACCGGCGACGg -3'
miRNA:   3'- aaGCUAGCGCGa--CGUC------UGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 13582 0.67 0.529367
Target:  5'- aUCGuggCGCGCaUGCccguGCCGGCGACc -3'
miRNA:   3'- aAGCua-GCGCG-ACGuc--UGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 35137 0.67 0.529367
Target:  5'- cUUCGAagUCGCGCccGCcGA-CGACGGCAg -3'
miRNA:   3'- -AAGCU--AGCGCGa-CGuCUgGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 6941 0.67 0.518587
Target:  5'- cUUGAUCaGCGcCUGCGcguuGGCCGACGuCGc -3'
miRNA:   3'- aAGCUAG-CGC-GACGU----CUGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 2262 0.67 0.486798
Target:  5'- aUCGGUUuGCGCUGCccgaucaccgcGGCCGGCGuCAg -3'
miRNA:   3'- aAGCUAG-CGCGACGu----------CUGGCUGCuGU- -5'
28119 5' -56.2 NC_005887.1 + 18679 0.68 0.426209
Target:  5'- -cCGAUCGCGCUGCcGAgCaACGAa- -3'
miRNA:   3'- aaGCUAGCGCGACGuCUgGcUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 10990 0.69 0.370333
Target:  5'- aUCGggCGUGa-GCAGGCCGGcCGACGu -3'
miRNA:   3'- aAGCuaGCGCgaCGUCUGGCU-GCUGU- -5'
28119 5' -56.2 NC_005887.1 + 30828 0.69 0.397641
Target:  5'- cUCGccgCGCGCacggucgaGCuGACCGACGGCGa -3'
miRNA:   3'- aAGCua-GCGCGa-------CGuCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 16334 0.68 0.455962
Target:  5'- gUCGAUC-UGCUGCAucaGCuCGGCGACGg -3'
miRNA:   3'- aAGCUAGcGCGACGUc--UG-GCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 8443 0.66 0.566586
Target:  5'- cUUCG-UCGCGCUcugcgucaggcuuucGCAGGCUucggccgccaGACGGCAc -3'
miRNA:   3'- -AAGCuAGCGCGA---------------CGUCUGG----------CUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 25722 0.69 0.397641
Target:  5'- -gCGA-CGCGCUGCGG-CUGGCGGu- -3'
miRNA:   3'- aaGCUaGCGCGACGUCuGGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 26290 0.66 0.551165
Target:  5'- aUCGGacccgugCGCcaGCUGCAGGCCGGCcACc -3'
miRNA:   3'- aAGCUa------GCG--CGACGUCUGGCUGcUGu -5'
28119 5' -56.2 NC_005887.1 + 3773 0.67 0.486798
Target:  5'- -gCGGUCgGCGC-GCGGcUCGACGGCGu -3'
miRNA:   3'- aaGCUAG-CGCGaCGUCuGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 23637 0.69 0.379292
Target:  5'- gUCGcguUCGCaCUGCcGGCCGGCGAUg -3'
miRNA:   3'- aAGCu--AGCGcGACGuCUGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 18977 0.72 0.267365
Target:  5'- aUUCGGUgaGCGCUGCGGGCUgccggugccgGGCGACc -3'
miRNA:   3'- -AAGCUAg-CGCGACGUCUGG----------CUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 4923 0.67 0.529367
Target:  5'- aUCGAUCguGCGCUGCAcGGggGACGugAu -3'
miRNA:   3'- aAGCUAG--CGCGACGU-CUggCUGCugU- -5'
28119 5' -56.2 NC_005887.1 + 29988 0.67 0.529367
Target:  5'- --aGAUCGUGC-GCgAGGCCcGCGGCAu -3'
miRNA:   3'- aagCUAGCGCGaCG-UCUGGcUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.