miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28119 5' -56.2 NC_005887.1 + 40981 0.66 0.595494
Target:  5'- cUCGGUgCGCGCgcgGUAGcccuUCGGCGGCu -3'
miRNA:   3'- aAGCUA-GCGCGa--CGUCu---GGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 37317 0.7 0.335964
Target:  5'- aUUCGGUCGuCGCaGCAGcGCCGGCacuGGCAu -3'
miRNA:   3'- -AAGCUAGC-GCGaCGUC-UGGCUG---CUGU- -5'
28119 5' -56.2 NC_005887.1 + 35864 0.68 0.455962
Target:  5'- --gGAUUGCGCUcgGCAGACaCcGCGACGc -3'
miRNA:   3'- aagCUAGCGCGA--CGUCUG-GcUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 35137 0.67 0.529367
Target:  5'- cUUCGAagUCGCGCccGCcGA-CGACGGCAg -3'
miRNA:   3'- -AAGCU--AGCGCGa-CGuCUgGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 34890 0.66 0.584341
Target:  5'- gUCGuUCGCGCUGCccuucUCGACGAgGa -3'
miRNA:   3'- aAGCuAGCGCGACGucu--GGCUGCUgU- -5'
28119 5' -56.2 NC_005887.1 + 34710 0.72 0.274392
Target:  5'- gUCG-UCGCGCuUGCGGugCG-CGGCGa -3'
miRNA:   3'- aAGCuAGCGCG-ACGUCugGCuGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 32800 0.66 0.544595
Target:  5'- -gCGcgCGcCGCUucacgggcacgaacaGCGGGCCGACGugAu -3'
miRNA:   3'- aaGCuaGC-GCGA---------------CGUCUGGCUGCugU- -5'
28119 5' -56.2 NC_005887.1 + 30828 0.69 0.397641
Target:  5'- cUCGccgCGCGCacggucgaGCuGACCGACGGCGa -3'
miRNA:   3'- aAGCua-GCGCGa-------CGuCUGGCUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 30725 0.68 0.466126
Target:  5'- cUUG-UCGCGCUGCGuGGCCuucGCGACu -3'
miRNA:   3'- aAGCuAGCGCGACGU-CUGGc--UGCUGu -5'
28119 5' -56.2 NC_005887.1 + 29988 0.67 0.529367
Target:  5'- --aGAUCGUGC-GCgAGGCCcGCGGCAu -3'
miRNA:   3'- aagCUAGCGCGaCG-UCUGGcUGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 29452 0.69 0.416551
Target:  5'- -gCGAcCGCGCcGCauGGGCCGAgGGCAu -3'
miRNA:   3'- aaGCUaGCGCGaCG--UCUGGCUgCUGU- -5'
28119 5' -56.2 NC_005887.1 + 26431 0.67 0.476407
Target:  5'- -gCGGgaacgCGCGCUGCAG-CCGcGCGAg- -3'
miRNA:   3'- aaGCUa----GCGCGACGUCuGGC-UGCUgu -5'
28119 5' -56.2 NC_005887.1 + 26290 0.66 0.551165
Target:  5'- aUCGGacccgugCGCcaGCUGCAGGCCGGCcACc -3'
miRNA:   3'- aAGCUa------GCG--CGACGUCUGGCUGcUGu -5'
28119 5' -56.2 NC_005887.1 + 25722 0.69 0.397641
Target:  5'- -gCGA-CGCGCUGCGG-CUGGCGGu- -3'
miRNA:   3'- aaGCUaGCGCGACGUCuGGCUGCUgu -5'
28119 5' -56.2 NC_005887.1 + 24937 0.67 0.529367
Target:  5'- gUCGAUCGCGaCgcgugcgcGCGGGCCGccuugcgcGCGGCc -3'
miRNA:   3'- aAGCUAGCGC-Ga-------CGUCUGGC--------UGCUGu -5'
28119 5' -56.2 NC_005887.1 + 23637 0.69 0.379292
Target:  5'- gUCGcguUCGCaCUGCcGGCCGGCGAUg -3'
miRNA:   3'- aAGCu--AGCGcGACGuCUGGCUGCUGu -5'
28119 5' -56.2 NC_005887.1 + 23469 0.71 0.281567
Target:  5'- aUCGA-CGCGCUGCugcGGCUGccaGCGGCAg -3'
miRNA:   3'- aAGCUaGCGCGACGu--CUGGC---UGCUGU- -5'
28119 5' -56.2 NC_005887.1 + 23183 0.67 0.529367
Target:  5'- cUCG-UCGCGCUcGCGaucacGGCCGGgGGCGg -3'
miRNA:   3'- aAGCuAGCGCGA-CGU-----CUGGCUgCUGU- -5'
28119 5' -56.2 NC_005887.1 + 22138 0.66 0.595494
Target:  5'- -cUGAUCGCGCUcgGCuucaucggcgaaGGGCUGACGcGCAa -3'
miRNA:   3'- aaGCUAGCGCGA--CG------------UCUGGCUGC-UGU- -5'
28119 5' -56.2 NC_005887.1 + 19339 0.71 0.294104
Target:  5'- cUCGAuaagcugaccaugcUCGCGCaGCAGACgcgugCGGCGACGa -3'
miRNA:   3'- aAGCU--------------AGCGCGaCGUCUG-----GCUGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.