Results 41 - 51 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 85997 | 0.73 | 0.466237 |
Target: 5'- gCAGCGGCGucaaacGCGGCCACgGgCGGCgGCg -3' miRNA: 3'- -GUCGUCGU------UGCUGGUGgC-GCCGaUGa -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 137612 | 0.73 | 0.43869 |
Target: 5'- -cGCGGCAGCGGCCGCCccgggGCGGgaAUUu -3' miRNA: 3'- guCGUCGUUGCUGGUGG-----CGCCgaUGA- -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 115608 | 0.74 | 0.420851 |
Target: 5'- gCGGCccAGCGacGCGGCUugCGCGGcCUACUg -3' miRNA: 3'- -GUCG--UCGU--UGCUGGugGCGCC-GAUGA- -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 146251 | 0.74 | 0.403457 |
Target: 5'- gCGGCGGCucAUGGCCACCagGCGGCcGCg -3' miRNA: 3'- -GUCGUCGu-UGCUGGUGG--CGCCGaUGa -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 4912 | 0.75 | 0.370069 |
Target: 5'- gCAG-AGCuguGCGACCACCaGCGGCUGuCUg -3' miRNA: 3'- -GUCgUCGu--UGCUGGUGG-CGCCGAU-GA- -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 106056 | 0.75 | 0.370069 |
Target: 5'- cCAGC-GCGGCGGCaGCCGCGGCgagGCc -3' miRNA: 3'- -GUCGuCGUUGCUGgUGGCGCCGa--UGa -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 117450 | 0.76 | 0.323638 |
Target: 5'- gCAGCAGCAuCGGCC-CCGgCGGCgGCUu -3' miRNA: 3'- -GUCGUCGUuGCUGGuGGC-GCCGaUGA- -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 118360 | 0.76 | 0.323638 |
Target: 5'- cCGGCAGCGGCGGuccucCUACCccgGCGGCUGCc -3' miRNA: 3'- -GUCGUCGUUGCU-----GGUGG---CGCCGAUGa -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 123507 | 0.77 | 0.275133 |
Target: 5'- -cGCAGguACG-CCGCgGCGGCUGCg -3' miRNA: 3'- guCGUCguUGCuGGUGgCGCCGAUGa -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 123036 | 0.78 | 0.238338 |
Target: 5'- gCGGCAGCGagaccGCGugCGCCGCGGUguccgUGCUg -3' miRNA: 3'- -GUCGUCGU-----UGCugGUGGCGCCG-----AUGA- -5' |
|||||||
2812 | 3' | -57.2 | NC_001491.2 | + | 136959 | 0.82 | 0.1269 |
Target: 5'- gCGGCAGCAGCcACCGCCucuGCGGCUGCc -3' miRNA: 3'- -GUCGUCGUUGcUGGUGG---CGCCGAUGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home