miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 3' -57.2 NC_001491.2 + 136959 0.82 0.1269
Target:  5'- gCGGCAGCAGCcACCGCCucuGCGGCUGCc -3'
miRNA:   3'- -GUCGUCGUUGcUGGUGG---CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 123036 0.78 0.238338
Target:  5'- gCGGCAGCGagaccGCGugCGCCGCGGUguccgUGCUg -3'
miRNA:   3'- -GUCGUCGU-----UGCugGUGGCGCCG-----AUGA- -5'
2812 3' -57.2 NC_001491.2 + 123507 0.77 0.275133
Target:  5'- -cGCAGguACG-CCGCgGCGGCUGCg -3'
miRNA:   3'- guCGUCguUGCuGGUGgCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 118360 0.76 0.323638
Target:  5'- cCGGCAGCGGCGGuccucCUACCccgGCGGCUGCc -3'
miRNA:   3'- -GUCGUCGUUGCU-----GGUGG---CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 117450 0.76 0.323638
Target:  5'- gCAGCAGCAuCGGCC-CCGgCGGCgGCUu -3'
miRNA:   3'- -GUCGUCGUuGCUGGuGGC-GCCGaUGA- -5'
2812 3' -57.2 NC_001491.2 + 106056 0.75 0.370069
Target:  5'- cCAGC-GCGGCGGCaGCCGCGGCgagGCc -3'
miRNA:   3'- -GUCGuCGUUGCUGgUGGCGCCGa--UGa -5'
2812 3' -57.2 NC_001491.2 + 4912 0.75 0.370069
Target:  5'- gCAG-AGCuguGCGACCACCaGCGGCUGuCUg -3'
miRNA:   3'- -GUCgUCGu--UGCUGGUGG-CGCCGAU-GA- -5'
2812 3' -57.2 NC_001491.2 + 146251 0.74 0.403457
Target:  5'- gCGGCGGCucAUGGCCACCagGCGGCcGCg -3'
miRNA:   3'- -GUCGUCGu-UGCUGGUGG--CGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 115608 0.74 0.420851
Target:  5'- gCGGCccAGCGacGCGGCUugCGCGGcCUACUg -3'
miRNA:   3'- -GUCG--UCGU--UGCUGGugGCGCC-GAUGA- -5'
2812 3' -57.2 NC_001491.2 + 137612 0.73 0.43869
Target:  5'- -cGCGGCAGCGGCCGCCccgggGCGGgaAUUu -3'
miRNA:   3'- guCGUCGUUGCUGGUGG-----CGCCgaUGA- -5'
2812 3' -57.2 NC_001491.2 + 85997 0.73 0.466237
Target:  5'- gCAGCGGCGucaaacGCGGCCACgGgCGGCgGCg -3'
miRNA:   3'- -GUCGUCGU------UGCUGGUGgC-GCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 51272 0.73 0.475617
Target:  5'- aGGCGGCAACGcCgGCCuggucccccuggGCGGCUGCc -3'
miRNA:   3'- gUCGUCGUUGCuGgUGG------------CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 146391 0.72 0.5043
Target:  5'- gCGGCAGCGGCGGCCuggGCCGgguagcCGGCcACg -3'
miRNA:   3'- -GUCGUCGUUGCUGG---UGGC------GCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 116058 0.71 0.553644
Target:  5'- cCAGCacucccagAGCGGCGGaggCGCCGgGGCUACg -3'
miRNA:   3'- -GUCG--------UCGUUGCUg--GUGGCgCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 144874 0.71 0.580895
Target:  5'- gGGCGGCAGCcgccgggguaggagGACCGCCGCuGCcgGCg -3'
miRNA:   3'- gUCGUCGUUG--------------CUGGUGGCGcCGa-UGa -5'
2812 3' -57.2 NC_001491.2 + 4310 0.7 0.61455
Target:  5'- aCAGCAGCGACuGCaaGCUGgGGCUAUUg -3'
miRNA:   3'- -GUCGUCGUUGcUGg-UGGCgCCGAUGA- -5'
2812 3' -57.2 NC_001491.2 + 86709 0.7 0.63401
Target:  5'- aCAGCugucugaGGCGGCGGCCAUCauGCGGC-ACg -3'
miRNA:   3'- -GUCG-------UCGUUGCUGGUGG--CGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 125600 0.7 0.645277
Target:  5'- gGGCGGCcGCuGCCGCgGCGGCgGCc -3'
miRNA:   3'- gUCGUCGuUGcUGGUGgCGCCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 123433 0.69 0.655509
Target:  5'- cCAGUAGCGcucuGCGuCCGCCGgCGGCg--- -3'
miRNA:   3'- -GUCGUCGU----UGCuGGUGGC-GCCGauga -5'
2812 3' -57.2 NC_001491.2 + 146507 0.69 0.655509
Target:  5'- gAGCGGCcGCGGCCGCgGCaGCcuUGCg -3'
miRNA:   3'- gUCGUCGuUGCUGGUGgCGcCG--AUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.