miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 3' -57.2 NC_001491.2 + 4310 0.7 0.61455
Target:  5'- aCAGCAGCGACuGCaaGCUGgGGCUAUUg -3'
miRNA:   3'- -GUCGUCGUUGcUGg-UGGCgCCGAUGA- -5'
2812 3' -57.2 NC_001491.2 + 4912 0.75 0.370069
Target:  5'- gCAG-AGCuguGCGACCACCaGCGGCUGuCUg -3'
miRNA:   3'- -GUCgUCGu--UGCUGGUGG-CGCCGAU-GA- -5'
2812 3' -57.2 NC_001491.2 + 6820 0.68 0.716206
Target:  5'- gCAGCuGCAgAUGAUUACCGgGGCgugGCUu -3'
miRNA:   3'- -GUCGuCGU-UGCUGGUGGCgCCGa--UGA- -5'
2812 3' -57.2 NC_001491.2 + 19157 0.67 0.774306
Target:  5'- aCGGCGGCcACGAUagcaccagugaCACCGUGGgUAUUg -3'
miRNA:   3'- -GUCGUCGuUGCUG-----------GUGGCGCCgAUGA- -5'
2812 3' -57.2 NC_001491.2 + 23266 0.67 0.791843
Target:  5'- aAGCGcGCAACGggcgcgcGCCGCCugGCGGCaACUc -3'
miRNA:   3'- gUCGU-CGUUGC-------UGGUGG--CGCCGaUGA- -5'
2812 3' -57.2 NC_001491.2 + 31715 0.68 0.75535
Target:  5'- uGGCAGCGugGAUaugcCCGUGGUUugGCUg -3'
miRNA:   3'- gUCGUCGUugCUGgu--GGCGCCGA--UGA- -5'
2812 3' -57.2 NC_001491.2 + 33389 0.67 0.792753
Target:  5'- gUAGUAGCGagACGcACCGCCGCgcgugGGUUugUg -3'
miRNA:   3'- -GUCGUCGU--UGC-UGGUGGCG-----CCGAugA- -5'
2812 3' -57.2 NC_001491.2 + 37880 0.67 0.783597
Target:  5'- cCAGCGGCAcccACGGCUuguCCG-GGcCUGCUc -3'
miRNA:   3'- -GUCGUCGU---UGCUGGu--GGCgCC-GAUGA- -5'
2812 3' -57.2 NC_001491.2 + 40200 0.68 0.745705
Target:  5'- -uGUuuGGCGGCGGCUAUCGCGGCc--- -3'
miRNA:   3'- guCG--UCGUUGCUGGUGGCGCCGauga -5'
2812 3' -57.2 NC_001491.2 + 41389 0.68 0.735959
Target:  5'- aGGUGGCcuUGuCCAgCGCGGCUGCc -3'
miRNA:   3'- gUCGUCGuuGCuGGUgGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 42902 0.69 0.686059
Target:  5'- cUAGCGGCAGCGAucuCCACUGCGuugACg -3'
miRNA:   3'- -GUCGUCGUUGCU---GGUGGCGCcgaUGa -5'
2812 3' -57.2 NC_001491.2 + 45122 0.69 0.665723
Target:  5'- -cGCGGCGGgGGCCGCCGCagauuuggccggGGCcGCg -3'
miRNA:   3'- guCGUCGUUgCUGGUGGCG------------CCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 45188 0.69 0.665723
Target:  5'- -cGCGGCGGgGGCCGCCGCagauuuggccggGGCcGCg -3'
miRNA:   3'- guCGUCGUUgCUGGUGGCG------------CCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 45254 0.69 0.665723
Target:  5'- -cGCGGCGGgGGCCGCCGCagauuuggccggGGCcGCg -3'
miRNA:   3'- guCGUCGUUgCUGGUGGCG------------CCGaUGa -5'
2812 3' -57.2 NC_001491.2 + 50168 0.69 0.674892
Target:  5'- aUAGCAcGCAuuCGGCgCAgguucuuCCGCGGCUGCg -3'
miRNA:   3'- -GUCGU-CGUu-GCUG-GU-------GGCGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 51272 0.73 0.475617
Target:  5'- aGGCGGCAACGcCgGCCuggucccccuggGCGGCUGCc -3'
miRNA:   3'- gUCGUCGUUGCuGgUGG------------CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 52814 0.66 0.835354
Target:  5'- gGGUGGCaAACGGCCuguuGCCgugucugaggauaGCGGCUACc -3'
miRNA:   3'- gUCGUCG-UUGCUGG----UGG-------------CGCCGAUGa -5'
2812 3' -57.2 NC_001491.2 + 54621 0.67 0.810618
Target:  5'- aCGGCGGCAaacagaGCGGCgGCaGCGGCg--- -3'
miRNA:   3'- -GUCGUCGU------UGCUGgUGgCGCCGauga -5'
2812 3' -57.2 NC_001491.2 + 69300 0.66 0.827836
Target:  5'- uCAGCGGCAGCcGCCGUCGUGaguuuauuuccaGCUGCg -3'
miRNA:   3'- -GUCGUCGUUGcUGGUGGCGC------------CGAUGa -5'
2812 3' -57.2 NC_001491.2 + 74255 0.66 0.84755
Target:  5'- aAGCAGCAgcccucgcucccgccGCGccGCCGCCGCaGCaGCc -3'
miRNA:   3'- gUCGUCGU---------------UGC--UGGUGGCGcCGaUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.