miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 45198 0.76 0.303286
Target:  5'- -uGGCCgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 45264 0.76 0.303286
Target:  5'- -uGGCCgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 48944 0.68 0.76316
Target:  5'- -gAACgCACC-CGGCUGCCAgCCuCCGg -3'
miRNA:   3'- cgUUG-GUGGcGCCGAUGGU-GGuGGCg -5'
2812 5' -57.9 NC_001491.2 + 49292 0.7 0.615572
Target:  5'- gGCAACCACaGUGGCgACUGCaCAUgGCg -3'
miRNA:   3'- -CGUUGGUGgCGCCGaUGGUG-GUGgCG- -5'
2812 5' -57.9 NC_001491.2 + 49491 0.69 0.655762
Target:  5'- cCGGCCAUgGCcGUUGCCGCCgggGCCGUc -3'
miRNA:   3'- cGUUGGUGgCGcCGAUGGUGG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 49699 0.68 0.712394
Target:  5'- cGCGGCCACgGUagauuguuguuuggGGCcaaacACC-CCACCGCc -3'
miRNA:   3'- -CGUUGGUGgCG--------------CCGa----UGGuGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 51268 0.69 0.655762
Target:  5'- gGCAacGCCgGCCuggucccccuggGCGGCUGCCGCCAgCa- -3'
miRNA:   3'- -CGU--UGG-UGG------------CGCCGAUGGUGGUgGcg -5'
2812 5' -57.9 NC_001491.2 + 51986 0.69 0.665783
Target:  5'- -aAACC-CCGUGGUaACCAagACCGCa -3'
miRNA:   3'- cgUUGGuGGCGCCGaUGGUggUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 56520 0.67 0.790583
Target:  5'- gGCAGCCaugACCGaGGCUAgccgUCGCUcuauACCGCu -3'
miRNA:   3'- -CGUUGG---UGGCgCCGAU----GGUGG----UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 58780 0.68 0.71533
Target:  5'- cGCAAaCACCGCGGuCUGa-ACCAUCGg -3'
miRNA:   3'- -CGUUgGUGGCGCC-GAUggUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 59077 0.66 0.833428
Target:  5'- gGCAGCUGCCaUGGCcagGCCACCGuuaaaUGCu -3'
miRNA:   3'- -CGUUGGUGGcGCCGa--UGGUGGUg----GCG- -5'
2812 5' -57.9 NC_001491.2 + 59912 0.71 0.585529
Target:  5'- aCAGCU-CCGgGGgUACCACUauGCCGCu -3'
miRNA:   3'- cGUUGGuGGCgCCgAUGGUGG--UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 60150 0.66 0.860101
Target:  5'- uGCAcgcGCCugGCCucgagggcccugagaGCcGCUuCCGCCGCCGCg -3'
miRNA:   3'- -CGU---UGG--UGG---------------CGcCGAuGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 64734 0.67 0.781569
Target:  5'- cGCGGCUggggaaACCGCGGCcucggcgugGgCAUCACCGg -3'
miRNA:   3'- -CGUUGG------UGGCGCCGa--------UgGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 65455 0.69 0.675778
Target:  5'- gGCAguGCCaaggucguaGCCGCuuCUACCGCC-CCGCa -3'
miRNA:   3'- -CGU--UGG---------UGGCGccGAUGGUGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 65564 0.75 0.37486
Target:  5'- cCAACCGCagcaCGCGGUUuCCGCCAUCGUc -3'
miRNA:   3'- cGUUGGUG----GCGCCGAuGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 65746 0.69 0.665783
Target:  5'- cGCAGa-GCCG-GGCgcccguccACCACCAUCGCg -3'
miRNA:   3'- -CGUUggUGGCgCCGa-------UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 66069 0.66 0.830972
Target:  5'- cGguGCCuucucaguauauACCGcCGGCUuacaauucccugauGCCACCAUCGa -3'
miRNA:   3'- -CguUGG------------UGGC-GCCGA--------------UGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 66458 0.66 0.849382
Target:  5'- uGCAgGCCAgCGCGaGCUucgggAUCACCaacgGCUGCa -3'
miRNA:   3'- -CGU-UGGUgGCGC-CGA-----UGGUGG----UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 66938 0.66 0.833428
Target:  5'- uUAACUGCCcccagcuggguGCGGUUuuaGCCACgGCUGCg -3'
miRNA:   3'- cGUUGGUGG-----------CGCCGA---UGGUGgUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.