miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 1790 0.68 0.753784
Target:  5'- cGCcguCCAcgcCCGCGGCcGCUcuGCC-CCGCg -3'
miRNA:   3'- -CGuu-GGU---GGCGCCGaUGG--UGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 2312 0.66 0.841497
Target:  5'- -aAAUCACCGCggGGCggccgcACUACCAUCGg -3'
miRNA:   3'- cgUUGGUGGCG--CCGa-----UGGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 4903 0.73 0.469807
Target:  5'- uGCGACCACCaGCGGCUGUCugaCGUCGCg -3'
miRNA:   3'- -CGUUGGUGG-CGCCGAUGGug-GUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 13037 0.69 0.665783
Target:  5'- gGCGGCCAUUGgaGGUcgauaguuUACCACCGCCa- -3'
miRNA:   3'- -CGUUGGUGGCg-CCG--------AUGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 13160 0.66 0.84782
Target:  5'- cGCAGuCCuguuGCCGgGGCgucguggaaguaGCCGCCGCgCGUg -3'
miRNA:   3'- -CGUU-GG----UGGCgCCGa-----------UGGUGGUG-GCG- -5'
2812 5' -57.9 NC_001491.2 + 14346 0.68 0.724097
Target:  5'- aGCcGCUuCCGCGaaGCUGCCGCUuggcgcuGCCGUa -3'
miRNA:   3'- -CGuUGGuGGCGC--CGAUGGUGG-------UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 14411 0.67 0.79946
Target:  5'- aGCGGCC-UCGCGGUagUACCugucgcgcACCACCu- -3'
miRNA:   3'- -CGUUGGuGGCGCCG--AUGG--------UGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 21689 0.66 0.857077
Target:  5'- aGC-AUCAUCGCaGUUACUugCgggGCCGCg -3'
miRNA:   3'- -CGuUGGUGGCGcCGAUGGugG---UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 28603 0.67 0.808191
Target:  5'- cGCAGCCG-CGCGcGCUAgguauguagcguCCAUCAUCGg -3'
miRNA:   3'- -CGUUGGUgGCGC-CGAU------------GGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 29635 0.69 0.685739
Target:  5'- --uACC-CCGgGGUUACCcucGCCaACCGCa -3'
miRNA:   3'- cguUGGuGGCgCCGAUGG---UGG-UGGCG- -5'
2812 5' -57.9 NC_001491.2 + 29960 0.66 0.857077
Target:  5'- --uGCCGCucugggucgCGCGGCggcgACUGCCACCa- -3'
miRNA:   3'- cguUGGUG---------GCGCCGa---UGGUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 31903 0.68 0.762228
Target:  5'- aGCAGUCggugugaGCCGCGGUgcCCGCCuuCGCg -3'
miRNA:   3'- -CGUUGG-------UGGCGCCGauGGUGGugGCG- -5'
2812 5' -57.9 NC_001491.2 + 35379 0.7 0.635673
Target:  5'- uGCAAaaagggggaCACCGaGGCUAUUAUCGCCGUu -3'
miRNA:   3'- -CGUUg--------GUGGCgCCGAUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 37204 0.74 0.425054
Target:  5'- cGCGACauCACCGUGGCgauaCACCGCCa- -3'
miRNA:   3'- -CGUUG--GUGGCGCCGaug-GUGGUGGcg -5'
2812 5' -57.9 NC_001491.2 + 40147 0.66 0.839898
Target:  5'- gGCGACCGCaCGaaGUUuuguagucacuuCUGCCGCCGCa -3'
miRNA:   3'- -CGUUGGUG-GCgcCGAu-----------GGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 41292 0.8 0.173586
Target:  5'- cGCGGCCuuUGCGGCUuCCACCACCucGCg -3'
miRNA:   3'- -CGUUGGugGCGCCGAuGGUGGUGG--CG- -5'
2812 5' -57.9 NC_001491.2 + 41385 0.68 0.744303
Target:  5'- gGCcuuguCCAgCGCGGCUGCCACacuUUGUg -3'
miRNA:   3'- -CGuu---GGUgGCGCCGAUGGUGgu-GGCG- -5'
2812 5' -57.9 NC_001491.2 + 42555 0.68 0.753784
Target:  5'- aGC-ACUGCCGCGuaUAUCuCgGCCGCa -3'
miRNA:   3'- -CGuUGGUGGCGCcgAUGGuGgUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 43057 0.69 0.705523
Target:  5'- gGCGgagGCUAUCuuuGCGGCcGCCGCCcguCCGCu -3'
miRNA:   3'- -CGU---UGGUGG---CGCCGaUGGUGGu--GGCG- -5'
2812 5' -57.9 NC_001491.2 + 45132 0.76 0.303286
Target:  5'- -uGGCCgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- cgUUGG---UGGCGCCGa---UGGUGG---------------UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.