miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2812 5' -57.9 NC_001491.2 + 139712 0.9 0.038324
Target:  5'- cGCAGCCGCCGCGGCgUACCugCGcgcCCGCg -3'
miRNA:   3'- -CGUUGGUGGCGCCG-AUGGugGU---GGCG- -5'
2812 5' -57.9 NC_001491.2 + 136954 0.88 0.051411
Target:  5'- aGCAGCCACCgccucuGCGGCUGCCAUUGCUGCa -3'
miRNA:   3'- -CGUUGGUGG------CGCCGAUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 144870 0.85 0.082696
Target:  5'- gGCAGCCGCCGgGGUaggaggACCGCCGCUGCc -3'
miRNA:   3'- -CGUUGGUGGCgCCGa-----UGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 137621 0.82 0.142059
Target:  5'- gGCcGCCGCCGCGGCagcgGCCGCC-CCGg -3'
miRNA:   3'- -CGuUGGUGGCGCCGa---UGGUGGuGGCg -5'
2812 5' -57.9 NC_001491.2 + 116975 0.81 0.169327
Target:  5'- cGCGGCCGCCuCGGUgGCCaugaGCCGCCGCu -3'
miRNA:   3'- -CGUUGGUGGcGCCGaUGG----UGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 145772 0.8 0.173586
Target:  5'- aGCcGCCGCCGgGGCcgaugcugcUGCUGCCGCCGCc -3'
miRNA:   3'- -CGuUGGUGGCgCCG---------AUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 41292 0.8 0.173586
Target:  5'- cGCGGCCuuUGCGGCUuCCACCACCucGCg -3'
miRNA:   3'- -CGUUGGugGCGCCGAuGGUGGUGG--CG- -5'
2812 5' -57.9 NC_001491.2 + 118736 0.8 0.186938
Target:  5'- aGCGcCCGCCGCGGaaccCCGCCACCGg -3'
miRNA:   3'- -CGUuGGUGGCGCCgau-GGUGGUGGCg -5'
2812 5' -57.9 NC_001491.2 + 116846 0.78 0.232525
Target:  5'- --cGCCGCCGUggccGGCUACCcggcccagGCCGCCGCu -3'
miRNA:   3'- cguUGGUGGCG----CCGAUGG--------UGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74187 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74091 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74219 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74059 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74123 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74027 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 73995 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74155 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 74251 0.78 0.249683
Target:  5'- aGCAGCCcucgcucCCGCcGC-GCCGCCGCCGCa -3'
miRNA:   3'- -CGUUGGu------GGCGcCGaUGGUGGUGGCG- -5'
2812 5' -57.9 NC_001491.2 + 125512 0.77 0.267873
Target:  5'- aCGGCCGCCGCcGCgacGCCGCC-CCGCc -3'
miRNA:   3'- cGUUGGUGGCGcCGa--UGGUGGuGGCG- -5'
2812 5' -57.9 NC_001491.2 + 116725 0.77 0.27417
Target:  5'- -gGGCC-CCGacgcaaGGCUGCCGCgGCCGCg -3'
miRNA:   3'- cgUUGGuGGCg-----CCGAUGGUGgUGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.