Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28120 | 5' | -58.8 | NC_005887.1 | + | 1000 | 0.66 | 0.423933 |
Target: 5'- uGC-CGGCCgCCGuGCG-CGCGCUGu- -3' miRNA: 3'- cCGuGCUGG-GGCuCGCaGUGCGACuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 3444 | 0.69 | 0.273406 |
Target: 5'- gGGCGCGACCUaccaGAGCaucgGUCuguucgggccuggcGCGCUGAu -3' miRNA: 3'- -CCGUGCUGGGg---CUCG----CAG--------------UGCGACUu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 5135 | 0.66 | 0.423933 |
Target: 5'- cGGCAUGACCgCGcugcccgacgucGGCG-CGcCGCUGAu -3' miRNA: 3'- -CCGUGCUGGgGC------------UCGCaGU-GCGACUu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 7516 | 1.08 | 0.00039 |
Target: 5'- cGGCACGACCCCGAGCGUCACGCUGAAc -3' miRNA: 3'- -CCGUGCUGGGGCUCGCAGUGCGACUU- -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 9496 | 0.67 | 0.411711 |
Target: 5'- cGGC-CGACCCCGGcauGCugccgaacaccgucGUCACGCUc-- -3' miRNA: 3'- -CCGuGCUGGGGCU---CG--------------CAGUGCGAcuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 11943 | 0.66 | 0.441208 |
Target: 5'- cGGCGCugccgaacgacgaaaGACCgCCGAGCGUCGaaaacgauccgcccgUGCUGc- -3' miRNA: 3'- -CCGUG---------------CUGG-GGCUCGCAGU---------------GCGACuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 12868 | 0.67 | 0.405222 |
Target: 5'- aGGCACGACCguggcaggugCCGuGCG-CGaGCUGAu -3' miRNA: 3'- -CCGUGCUGG----------GGCuCGCaGUgCGACUu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 13685 | 0.69 | 0.297038 |
Target: 5'- aGUGCGGCCgCCGcGCGcCGCGCUGc- -3' miRNA: 3'- cCGUGCUGG-GGCuCGCaGUGCGACuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 14204 | 0.75 | 0.110229 |
Target: 5'- gGGCGCGGCCUCGgacagggcGGCGcCGCGCUGu- -3' miRNA: 3'- -CCGUGCUGGGGC--------UCGCaGUGCGACuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 15006 | 0.69 | 0.297038 |
Target: 5'- aGGCGUGcCgCCCGAGCugaugcUCGCGCUGAAg -3' miRNA: 3'- -CCGUGCuG-GGGCUCGc-----AGUGCGACUU- -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 15436 | 0.75 | 0.107168 |
Target: 5'- cGGCGuCGACCUgcuCGGGCGUCACGUgGAAc -3' miRNA: 3'- -CCGU-GCUGGG---GCUCGCAGUGCGaCUU- -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 17801 | 0.69 | 0.297038 |
Target: 5'- cGCGCGGCCgugCCGAGCGUCuuGaaGAAc -3' miRNA: 3'- cCGUGCUGG---GGCUCGCAGugCgaCUU- -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 18210 | 0.67 | 0.405222 |
Target: 5'- cGGCACGACgUCG-GCGgccCGCGCUu-- -3' miRNA: 3'- -CCGUGCUGgGGCuCGCa--GUGCGAcuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 19572 | 0.69 | 0.297038 |
Target: 5'- aGGCACG-UCgaGcAGCGUCACGCUGu- -3' miRNA: 3'- -CCGUGCuGGggC-UCGCAGUGCGACuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 21316 | 0.66 | 0.443152 |
Target: 5'- cGGUGC--CCCCGAGgGUCgauGCGUUGAu -3' miRNA: 3'- -CCGUGcuGGGGCUCgCAG---UGCGACUu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 21653 | 0.68 | 0.343996 |
Target: 5'- cGC-CGACCaaucugaCGGGCGUguCGCUGAc -3' miRNA: 3'- cCGuGCUGGg------GCUCGCAguGCGACUu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 24063 | 0.71 | 0.212656 |
Target: 5'- cGGCAgGAgauUCCCGAGCGccgccUCGCGCUcGAGc -3' miRNA: 3'- -CCGUgCU---GGGGCUCGC-----AGUGCGA-CUU- -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 26829 | 0.66 | 0.433481 |
Target: 5'- uGCGCGugCgCGAGCGggCGCGuCUGc- -3' miRNA: 3'- cCGUGCugGgGCUCGCa-GUGC-GACuu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 27592 | 0.7 | 0.242383 |
Target: 5'- aGCGCG-CCgUCGAGCGUCgugucgaagGCGCUGAu -3' miRNA: 3'- cCGUGCuGG-GGCUCGCAG---------UGCGACUu -5' |
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28120 | 5' | -58.8 | NC_005887.1 | + | 30480 | 0.68 | 0.32777 |
Target: 5'- uGCGCGACgcggCCCGuGCGUUGCGCa--- -3' miRNA: 3'- cCGUGCUG----GGGCuCGCAGUGCGacuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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