miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 17943 0.67 0.482069
Target:  5'- --cGUCGCGGCgGACAGguuccgggccCACGUCGucGCg -3'
miRNA:   3'- cacCAGCGUCG-CUGUC----------GUGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 18641 0.66 0.556407
Target:  5'- cUGGaaCGCcGCGACgAGCAUGUCGcccGCg -3'
miRNA:   3'- cACCa-GCGuCGCUG-UCGUGCAGCu--CG- -5'
28121 5' -56.6 NC_005887.1 + 15964 0.72 0.239637
Target:  5'- -aGGUCGgcCAGCu---GCGCGUCGAGCg -3'
miRNA:   3'- caCCAGC--GUCGcuguCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 16259 0.68 0.432024
Target:  5'- -cGGUCGCAGCG-CGGCcuCuUCGcGCa -3'
miRNA:   3'- caCCAGCGUCGCuGUCGu-GcAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 8173 0.66 0.556407
Target:  5'- -cGG-CGCcuCGGCgAGCGCGgCGAGCu -3'
miRNA:   3'- caCCaGCGucGCUG-UCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 13274 0.71 0.287144
Target:  5'- -gGcGUCaGCAGCGACA-CACGUCGgccGGCg -3'
miRNA:   3'- caC-CAG-CGUCGCUGUcGUGCAGC---UCG- -5'
28121 5' -56.6 NC_005887.1 + 3841 0.66 0.556407
Target:  5'- -cGGUCGCGGCccu----CGUCGAGCc -3'
miRNA:   3'- caCCAGCGUCGcugucguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 2832 0.66 0.578305
Target:  5'- cGUGG-CGCAG-GAUAGUGCGUUuauGCg -3'
miRNA:   3'- -CACCaGCGUCgCUGUCGUGCAGcu-CG- -5'
28121 5' -56.6 NC_005887.1 + 3335 0.69 0.412871
Target:  5'- aUGGaauccaUCGCGGCGACGaaguuGCGCagcgCGAGCg -3'
miRNA:   3'- cACC------AGCGUCGCUGU-----CGUGca--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 12681 0.75 0.159816
Target:  5'- cUGGUCGgGcuucuGCGuCAGCACGcCGAGCg -3'
miRNA:   3'- cACCAGCgU-----CGCuGUCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8120 0.67 0.513406
Target:  5'- --cGUgCGCAcGCaGACA-CGCGUCGAGCa -3'
miRNA:   3'- cacCA-GCGU-CG-CUGUcGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 24294 0.66 0.553142
Target:  5'- cGUGGccaGCAGCGcaucaaacggcuugGCAacacGCACGUCG-GCa -3'
miRNA:   3'- -CACCag-CGUCGC--------------UGU----CGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 8492 0.71 0.317471
Target:  5'- -cGGaUCGCucGGCGAUAGcCugGUCGuGCu -3'
miRNA:   3'- caCC-AGCG--UCGCUGUC-GugCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 3009 0.74 0.204307
Target:  5'- aUGGUCGCGGCGgugccGCGGCGCuugCGcAGCu -3'
miRNA:   3'- cACCAGCGUCGC-----UGUCGUGca-GC-UCG- -5'
28121 5' -56.6 NC_005887.1 + 18330 0.69 0.367361
Target:  5'- cUGGgggCGCaucGGCGACAuGCgACGuUCGGGCg -3'
miRNA:   3'- cACCa--GCG---UCGCUGU-CG-UGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 17402 0.69 0.363872
Target:  5'- cUGGUCGaucacguCGGCGGCAuggcgaagaacaucGCGCucGUCGAGCg -3'
miRNA:   3'- cACCAGC-------GUCGCUGU--------------CGUG--CAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18564 0.68 0.471829
Target:  5'- -cGGcuUCGCgGGCGACAuGCuCGUCGcGGCg -3'
miRNA:   3'- caCC--AGCG-UCGCUGU-CGuGCAGC-UCG- -5'
28121 5' -56.6 NC_005887.1 + 19544 0.72 0.259144
Target:  5'- cGUGGaCGgaCGGCGucgauuacguuGCAgGCACGUCGAGCa -3'
miRNA:   3'- -CACCaGC--GUCGC-----------UGU-CGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 30603 0.68 0.4617
Target:  5'- -cGGaUCGCGagcaacucGCG-CAGCGCGUCcGGCa -3'
miRNA:   3'- caCC-AGCGU--------CGCuGUCGUGCAGcUCG- -5'
28121 5' -56.6 NC_005887.1 + 34345 0.68 0.471829
Target:  5'- cGUGG-CGcCGGCcACGGCugGagaCGAGCg -3'
miRNA:   3'- -CACCaGC-GUCGcUGUCGugCa--GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.