miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 8492 0.71 0.317471
Target:  5'- -cGGaUCGCucGGCGAUAGcCugGUCGuGCu -3'
miRNA:   3'- caCC-AGCG--UCGCUGUC-GugCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 41963 0.7 0.322223
Target:  5'- cGUGGUgcgugCGCGGCGcgcucgccuaucaGCAGCacggccugcggcccACGUCGAGUg -3'
miRNA:   3'- -CACCA-----GCGUCGC-------------UGUCG--------------UGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14454 0.7 0.32542
Target:  5'- -aGGUCGUAcGCG-C-GCGCGcCGAGCg -3'
miRNA:   3'- caCCAGCGU-CGCuGuCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 15830 0.7 0.333516
Target:  5'- -aGGU-GCAGCGcuugcGCGGCGCGaUCGAGg -3'
miRNA:   3'- caCCAgCGUCGC-----UGUCGUGC-AGCUCg -5'
28121 5' -56.6 NC_005887.1 + 39775 0.7 0.345097
Target:  5'- cUGGUCGCGGCGcucgcgccgaucguuGC-GCGCGUCGucacuucGCa -3'
miRNA:   3'- cACCAGCGUCGC---------------UGuCGUGCAGCu------CG- -5'
28121 5' -56.6 NC_005887.1 + 34550 0.7 0.358682
Target:  5'- -cGGUCcgGGCGACAGCuucuCGggcgCGAGCc -3'
miRNA:   3'- caCCAGcgUCGCUGUCGu---GCa---GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 1592 0.7 0.358682
Target:  5'- -cGGUCGU--CGACAGCAgGUcCGGGUa -3'
miRNA:   3'- caCCAGCGucGCUGUCGUgCA-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 17402 0.69 0.363872
Target:  5'- cUGGUCGaucacguCGGCGGCAuggcgaagaacaucGCGCucGUCGAGCg -3'
miRNA:   3'- cACCAGC-------GUCGCUGU--------------CGUG--CAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18330 0.69 0.367361
Target:  5'- cUGGgggCGCaucGGCGACAuGCgACGuUCGGGCg -3'
miRNA:   3'- cACCa--GCG---UCGCUGU-CG-UGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 32816 0.69 0.367361
Target:  5'- aUGG-CGC-GCGcCGGCGCGcacgCGAGCg -3'
miRNA:   3'- cACCaGCGuCGCuGUCGUGCa---GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 33835 0.69 0.376183
Target:  5'- -cGG-CGCGGCGaucgaacgcauGCAGgGCGUaCGAGCc -3'
miRNA:   3'- caCCaGCGUCGC-----------UGUCgUGCA-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 26088 0.69 0.376183
Target:  5'- -cGGcccgCGCGGCGuuuCAugGCGUCGAGCa -3'
miRNA:   3'- caCCa---GCGUCGCu--GUcgUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 4436 0.69 0.385147
Target:  5'- aUGGUUGCAGCagcuCGGCAuCGUCucGCa -3'
miRNA:   3'- cACCAGCGUCGcu--GUCGU-GCAGcuCG- -5'
28121 5' -56.6 NC_005887.1 + 29405 0.69 0.394251
Target:  5'- -cGGUCGCgaucaGGCucGACAGCuCGUCG-GCc -3'
miRNA:   3'- caCCAGCG-----UCG--CUGUCGuGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 29507 0.69 0.402562
Target:  5'- -cGGccUCGaCGGCGggcgcguuguagaACAGCACGUCGcGCg -3'
miRNA:   3'- caCC--AGC-GUCGC-------------UGUCGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 3335 0.69 0.412871
Target:  5'- aUGGaauccaUCGCGGCGACGaaguuGCGCagcgCGAGCg -3'
miRNA:   3'- cACC------AGCGUCGCUGU-----CGUGca--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 41032 0.69 0.412871
Target:  5'- cUGG-CGCcGCGcGguGCAgGUCGAGCu -3'
miRNA:   3'- cACCaGCGuCGC-UguCGUgCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14502 0.68 0.432024
Target:  5'- cUGGucgaUCGCGGUuGC-GCGCGUCGGGUc -3'
miRNA:   3'- cACC----AGCGUCGcUGuCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 39908 0.68 0.432024
Target:  5'- -cGGUCGauugauguGCGACGGCGgccCGUCGcGCu -3'
miRNA:   3'- caCCAGCgu------CGCUGUCGU---GCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 2876 0.68 0.432024
Target:  5'- gGUGGauaacgCGCAGgcgaCGACGGaCACGUCG-GCc -3'
miRNA:   3'- -CACCa-----GCGUC----GCUGUC-GUGCAGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.