miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 28226 0.67 0.492415
Target:  5'- -cGGUUuugaGCAGCGcgcGCAGCuuCG-CGAGCg -3'
miRNA:   3'- caCCAG----CGUCGC---UGUCGu-GCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23454 0.67 0.486195
Target:  5'- -cGGcUGcCAGCGGCAGCGCGagcagcaaaagcaucUgCGAGCg -3'
miRNA:   3'- caCCaGC-GUCGCUGUCGUGC---------------A-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 17943 0.67 0.482069
Target:  5'- --cGUCGCGGCgGACAGguuccgggccCACGUCGucGCg -3'
miRNA:   3'- cacCAGCGUCG-CUGUC----------GUGCAGCu-CG- -5'
28121 5' -56.6 NC_005887.1 + 12172 0.67 0.482069
Target:  5'- cUGG-CGCuucugcGCGGcCAGCACGUCG-GUg -3'
miRNA:   3'- cACCaGCGu-----CGCU-GUCGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 23508 0.67 0.482069
Target:  5'- gGUGGaaGCGGCGggauggcggGCGGCuGCGaCGAGCu -3'
miRNA:   3'- -CACCagCGUCGC---------UGUCG-UGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 28128 0.67 0.480012
Target:  5'- gGUGGUcaagaacagCGCGGCGACcugcaacaccucGCAcgccgacugguCGUCGAGCa -3'
miRNA:   3'- -CACCA---------GCGUCGCUGu-----------CGU-----------GCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18564 0.68 0.471829
Target:  5'- -cGGcuUCGCgGGCGACAuGCuCGUCGcGGCg -3'
miRNA:   3'- caCC--AGCG-UCGCUGU-CGuGCAGC-UCG- -5'
28121 5' -56.6 NC_005887.1 + 34345 0.68 0.471829
Target:  5'- cGUGG-CGcCGGCcACGGCugGagaCGAGCg -3'
miRNA:   3'- -CACCaGC-GUCGcUGUCGugCa--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 29350 0.68 0.471829
Target:  5'- -cGGUaCGCGGagaaccCGGCAGC-CG-CGAGCg -3'
miRNA:   3'- caCCA-GCGUC------GCUGUCGuGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 26990 0.68 0.4617
Target:  5'- aGUGGuucgUCGaCGGCGGcCAGCGacUCGGGCg -3'
miRNA:   3'- -CACC----AGC-GUCGCU-GUCGUgcAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 30603 0.68 0.4617
Target:  5'- -cGGaUCGCGagcaacucGCG-CAGCGCGUCcGGCa -3'
miRNA:   3'- caCC-AGCGU--------CGCuGUCGUGCAGcUCG- -5'
28121 5' -56.6 NC_005887.1 + 9280 0.68 0.4617
Target:  5'- -cGGUCGgcaCGGCGACGccGCAgGUuaCGGGCa -3'
miRNA:   3'- caCCAGC---GUCGCUGU--CGUgCA--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 22946 0.68 0.458683
Target:  5'- -cGGUaucgcggaccgauaCGCucuGCGGCAGCuGCG-CGAGCa -3'
miRNA:   3'- caCCA--------------GCGu--CGCUGUCG-UGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 11553 0.68 0.451687
Target:  5'- -cGGcgCGCAGCGcGCGGCggucGCGgaaUCGGGCu -3'
miRNA:   3'- caCCa-GCGUCGC-UGUCG----UGC---AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 25481 0.68 0.441794
Target:  5'- uUGGgcacaaCGCAGCGGCggcucggacgauGGCGCGgCGGGUg -3'
miRNA:   3'- cACCa-----GCGUCGCUG------------UCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 23223 0.68 0.441794
Target:  5'- -aGGgccaCGC--CGACGGCACG-CGAGCg -3'
miRNA:   3'- caCCa---GCGucGCUGUCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 35398 0.68 0.441794
Target:  5'- cGUGGccggccgcCGCGGCGcGCGGCA-GUgGAGCg -3'
miRNA:   3'- -CACCa-------GCGUCGC-UGUCGUgCAgCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14502 0.68 0.432024
Target:  5'- cUGGucgaUCGCGGUuGC-GCGCGUCGGGUc -3'
miRNA:   3'- cACC----AGCGUCGcUGuCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 39908 0.68 0.432024
Target:  5'- -cGGUCGauugauguGCGACGGCGgccCGUCGcGCu -3'
miRNA:   3'- caCCAGCgu------CGCUGUCGU---GCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 2876 0.68 0.432024
Target:  5'- gGUGGauaacgCGCAGgcgaCGACGGaCACGUCG-GCc -3'
miRNA:   3'- -CACCa-----GCGUC----GCUGUC-GUGCAGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.