miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 7837 1.12 0.000306
Target:  5'- cGUGGUCGCAGCGACAGCACGUCGAGCa -3'
miRNA:   3'- -CACCAGCGUCGCUGUCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 12808 0.8 0.07632
Target:  5'- -cGcGUUGCAGCG-CGGCGCGaUCGAGCg -3'
miRNA:   3'- caC-CAGCGUCGCuGUCGUGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 15746 0.79 0.0882
Target:  5'- -cGGccgCGCGGCgGugAGCugGUCGAGCu -3'
miRNA:   3'- caCCa--GCGUCG-CugUCGugCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 12681 0.75 0.159816
Target:  5'- cUGGUCGgGcuucuGCGuCAGCACGcCGAGCg -3'
miRNA:   3'- cACCAGCgU-----CGCuGUCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 1848 0.74 0.1784
Target:  5'- -gGGUaGCGGcCGACGcGCAgGUCGAGCa -3'
miRNA:   3'- caCCAgCGUC-GCUGU-CGUgCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 21036 0.74 0.1784
Target:  5'- cGUGG-CGCcaAGCGcCAGCGCGggaacagCGAGCa -3'
miRNA:   3'- -CACCaGCG--UCGCuGUCGUGCa------GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14516 0.74 0.1784
Target:  5'- gGUGGUccgcuugcaggCGCGGCcgucGGCGGCGCGUCGAucgGCa -3'
miRNA:   3'- -CACCA-----------GCGUCG----CUGUCGUGCAGCU---CG- -5'
28121 5' -56.6 NC_005887.1 + 11005 0.74 0.183337
Target:  5'- cGUGGUgcucgGguGCGGCGGuCugGUCGAGUg -3'
miRNA:   3'- -CACCAg----CguCGCUGUC-GugCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 25136 0.74 0.188394
Target:  5'- -aGcGcCGCAGCuGCAGguCGUCGAGCa -3'
miRNA:   3'- caC-CaGCGUCGcUGUCguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 3009 0.74 0.204307
Target:  5'- aUGGUCGCGGCGgugccGCGGCGCuugCGcAGCu -3'
miRNA:   3'- cACCAGCGUCGC-----UGUCGUGca-GC-UCG- -5'
28121 5' -56.6 NC_005887.1 + 15964 0.72 0.239637
Target:  5'- -aGGUCGgcCAGCu---GCGCGUCGAGCg -3'
miRNA:   3'- caCCAGC--GUCGcuguCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 27559 0.72 0.246
Target:  5'- aUGGUgugcagcaCGCAGCGgaaguACAGCGCGagcgcgccgUCGAGCg -3'
miRNA:   3'- cACCA--------GCGUCGC-----UGUCGUGC---------AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 5872 0.72 0.246
Target:  5'- -aGGcgagUGgGGCGACAGCuacgaccggaACGUCGAGCu -3'
miRNA:   3'- caCCa---GCgUCGCUGUCG----------UGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 19544 0.72 0.259144
Target:  5'- cGUGGaCGgaCGGCGucgauuacguuGCAgGCACGUCGAGCa -3'
miRNA:   3'- -CACCaGC--GUCGC-----------UGU-CGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 13274 0.71 0.287144
Target:  5'- -gGcGUCaGCAGCGACA-CACGUCGgccGGCg -3'
miRNA:   3'- caC-CAG-CGUCGCUGUcGUGCAGC---UCG- -5'
28121 5' -56.6 NC_005887.1 + 5911 0.71 0.302014
Target:  5'- -cGGUCGCcaGGCGAUGcGCAaguucggugUGUCGGGCg -3'
miRNA:   3'- caCCAGCG--UCGCUGU-CGU---------GCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 11299 0.71 0.302014
Target:  5'- cUGcUCGCAGCGGcCGGCuCGgcagCGAGCg -3'
miRNA:   3'- cACcAGCGUCGCU-GUCGuGCa---GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 15037 0.71 0.308897
Target:  5'- -cGGccugCGCGGCGuaggcgucgaguuGCGGCGCGUCGuacGGCa -3'
miRNA:   3'- caCCa---GCGUCGC-------------UGUCGUGCAGC---UCG- -5'
28121 5' -56.6 NC_005887.1 + 38865 0.71 0.309669
Target:  5'- -cGcGUUGuCGGCGAUAGCAUGUacaaccCGAGCg -3'
miRNA:   3'- caC-CAGC-GUCGCUGUCGUGCA------GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8492 0.71 0.317471
Target:  5'- -cGGaUCGCucGGCGAUAGcCugGUCGuGCu -3'
miRNA:   3'- caCC-AGCG--UCGCUGUC-GugCAGCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.