miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 1592 0.7 0.358682
Target:  5'- -cGGUCGU--CGACAGCAgGUcCGGGUa -3'
miRNA:   3'- caCCAGCGucGCUGUCGUgCA-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 1848 0.74 0.1784
Target:  5'- -gGGUaGCGGcCGACGcGCAgGUCGAGCa -3'
miRNA:   3'- caCCAgCGUC-GCUGU-CGUgCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 2832 0.66 0.578305
Target:  5'- cGUGG-CGCAG-GAUAGUGCGUUuauGCg -3'
miRNA:   3'- -CACCaGCGUCgCUGUCGUGCAGcu-CG- -5'
28121 5' -56.6 NC_005887.1 + 2876 0.68 0.432024
Target:  5'- gGUGGauaacgCGCAGgcgaCGACGGaCACGUCG-GCc -3'
miRNA:   3'- -CACCa-----GCGUC----GCUGUC-GUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 3009 0.74 0.204307
Target:  5'- aUGGUCGCGGCGgugccGCGGCGCuugCGcAGCu -3'
miRNA:   3'- cACCAGCGUCGC-----UGUCGUGca-GC-UCG- -5'
28121 5' -56.6 NC_005887.1 + 3335 0.69 0.412871
Target:  5'- aUGGaauccaUCGCGGCGACGaaguuGCGCagcgCGAGCg -3'
miRNA:   3'- cACC------AGCGUCGCUGU-----CGUGca--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 3841 0.66 0.556407
Target:  5'- -cGGUCGCGGCccu----CGUCGAGCc -3'
miRNA:   3'- caCCAGCGUCGcugucguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 4436 0.69 0.385147
Target:  5'- aUGGUUGCAGCagcuCGGCAuCGUCucGCa -3'
miRNA:   3'- cACCAGCGUCGcu--GUCGU-GCAGcuCG- -5'
28121 5' -56.6 NC_005887.1 + 4895 0.66 0.589327
Target:  5'- aUGGUCGCcgAGgGcCGGCGCGagguguUCGuGCg -3'
miRNA:   3'- cACCAGCG--UCgCuGUCGUGC------AGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 5872 0.72 0.246
Target:  5'- -aGGcgagUGgGGCGACAGCuacgaccggaACGUCGAGCu -3'
miRNA:   3'- caCCa---GCgUCGCUGUCG----------UGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 5911 0.71 0.302014
Target:  5'- -cGGUCGCcaGGCGAUGcGCAaguucggugUGUCGGGCg -3'
miRNA:   3'- caCCAGCG--UCGCUGU-CGU---------GCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 7837 1.12 0.000306
Target:  5'- cGUGGUCGCAGCGACAGCACGUCGAGCa -3'
miRNA:   3'- -CACCAGCGUCGCUGUCGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8120 0.67 0.513406
Target:  5'- --cGUgCGCAcGCaGACA-CGCGUCGAGCa -3'
miRNA:   3'- cacCA-GCGU-CG-CUGUcGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8173 0.66 0.556407
Target:  5'- -cGG-CGCcuCGGCgAGCGCGgCGAGCu -3'
miRNA:   3'- caCCaGCGucGCUG-UCGUGCaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 8492 0.71 0.317471
Target:  5'- -cGGaUCGCucGGCGAUAGcCugGUCGuGCu -3'
miRNA:   3'- caCC-AGCG--UCGCUGUC-GugCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 9123 0.66 0.531531
Target:  5'- cUGGUCGCaAGCGcauCGGUauucaggccguccgACGUCG-GCa -3'
miRNA:   3'- cACCAGCG-UCGCu--GUCG--------------UGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 9280 0.68 0.4617
Target:  5'- -cGGUCGgcaCGGCGACGccGCAgGUuaCGGGCa -3'
miRNA:   3'- caCCAGC---GUCGCUGU--CGUgCA--GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 10759 0.67 0.513406
Target:  5'- cUGG-CGCGGCG--GGUACGagGGGCa -3'
miRNA:   3'- cACCaGCGUCGCugUCGUGCagCUCG- -5'
28121 5' -56.6 NC_005887.1 + 11005 0.74 0.183337
Target:  5'- cGUGGUgcucgGguGCGGCGGuCugGUCGAGUg -3'
miRNA:   3'- -CACCAg----CguCGCUGUC-GugCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 11299 0.71 0.302014
Target:  5'- cUGcUCGCAGCGGcCGGCuCGgcagCGAGCg -3'
miRNA:   3'- cACcAGCGUCGCU-GUCGuGCa---GCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.