miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28121 5' -56.6 NC_005887.1 + 41032 0.69 0.412871
Target:  5'- cUGG-CGCcGCGcGguGCAgGUCGAGCu -3'
miRNA:   3'- cACCaGCGuCGC-UguCGUgCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 39775 0.7 0.345097
Target:  5'- cUGGUCGCGGCGcucgcgccgaucguuGC-GCGCGUCGucacuucGCa -3'
miRNA:   3'- cACCAGCGUCGC---------------UGuCGUGCAGCu------CG- -5'
28121 5' -56.6 NC_005887.1 + 17402 0.69 0.363872
Target:  5'- cUGGUCGaucacguCGGCGGCAuggcgaagaacaucGCGCucGUCGAGCg -3'
miRNA:   3'- cACCAGC-------GUCGCUGU--------------CGUG--CAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 18330 0.69 0.367361
Target:  5'- cUGGgggCGCaucGGCGACAuGCgACGuUCGGGCg -3'
miRNA:   3'- cACCa--GCG---UCGCUGU-CG-UGC-AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 26088 0.69 0.376183
Target:  5'- -cGGcccgCGCGGCGuuuCAugGCGUCGAGCa -3'
miRNA:   3'- caCCa---GCGUCGCu--GUcgUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 33835 0.69 0.376183
Target:  5'- -cGG-CGCGGCGaucgaacgcauGCAGgGCGUaCGAGCc -3'
miRNA:   3'- caCCaGCGUCGC-----------UGUCgUGCA-GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 4436 0.69 0.385147
Target:  5'- aUGGUUGCAGCagcuCGGCAuCGUCucGCa -3'
miRNA:   3'- cACCAGCGUCGcu--GUCGU-GCAGcuCG- -5'
28121 5' -56.6 NC_005887.1 + 29405 0.69 0.394251
Target:  5'- -cGGUCGCgaucaGGCucGACAGCuCGUCG-GCc -3'
miRNA:   3'- caCCAGCG-----UCG--CUGUCGuGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 29507 0.69 0.402562
Target:  5'- -cGGccUCGaCGGCGggcgcguuguagaACAGCACGUCGcGCg -3'
miRNA:   3'- caCC--AGC-GUCGC-------------UGUCGUGCAGCuCG- -5'
28121 5' -56.6 NC_005887.1 + 15830 0.7 0.333516
Target:  5'- -aGGU-GCAGCGcuugcGCGGCGCGaUCGAGg -3'
miRNA:   3'- caCCAgCGUCGC-----UGUCGUGC-AGCUCg -5'
28121 5' -56.6 NC_005887.1 + 41963 0.7 0.322223
Target:  5'- cGUGGUgcgugCGCGGCGcgcucgccuaucaGCAGCacggccugcggcccACGUCGAGUg -3'
miRNA:   3'- -CACCA-----GCGUCGC-------------UGUCG--------------UGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 13625 0.71 0.317471
Target:  5'- -cGGcgCGCGGCGGCcGCACucaGcCGAGCa -3'
miRNA:   3'- caCCa-GCGUCGCUGuCGUG---CaGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 14516 0.74 0.1784
Target:  5'- gGUGGUccgcuugcaggCGCGGCcgucGGCGGCGCGUCGAucgGCa -3'
miRNA:   3'- -CACCA-----------GCGUCG----CUGUCGUGCAGCU---CG- -5'
28121 5' -56.6 NC_005887.1 + 11005 0.74 0.183337
Target:  5'- cGUGGUgcucgGguGCGGCGGuCugGUCGAGUg -3'
miRNA:   3'- -CACCAg----CguCGCUGUC-GugCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 25136 0.74 0.188394
Target:  5'- -aGcGcCGCAGCuGCAGguCGUCGAGCa -3'
miRNA:   3'- caC-CaGCGUCGcUGUCguGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 5872 0.72 0.246
Target:  5'- -aGGcgagUGgGGCGACAGCuacgaccggaACGUCGAGCu -3'
miRNA:   3'- caCCa---GCgUCGCUGUCG----------UGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 27559 0.72 0.246
Target:  5'- aUGGUgugcagcaCGCAGCGgaaguACAGCGCGagcgcgccgUCGAGCg -3'
miRNA:   3'- cACCA--------GCGUCGC-----UGUCGUGC---------AGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 19544 0.72 0.259144
Target:  5'- cGUGGaCGgaCGGCGucgauuacguuGCAgGCACGUCGAGCa -3'
miRNA:   3'- -CACCaGC--GUCGC-----------UGU-CGUGCAGCUCG- -5'
28121 5' -56.6 NC_005887.1 + 11299 0.71 0.302014
Target:  5'- cUGcUCGCAGCGGcCGGCuCGgcagCGAGCg -3'
miRNA:   3'- cACcAGCGUCGCU-GUCGuGCa---GCUCG- -5'
28121 5' -56.6 NC_005887.1 + 5911 0.71 0.302014
Target:  5'- -cGGUCGCcaGGCGAUGcGCAaguucggugUGUCGGGCg -3'
miRNA:   3'- caCCAGCG--UCGCUGU-CGU---------GCAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.