Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28122 | 3' | -52.3 | NC_005887.1 | + | 3562 | 0.69 | 0.652629 |
Target: 5'- --aCGAUGcccuugcCGACGuCGUGCUCGAUc -3' miRNA: 3'- ugaGCUACau-----GCUGCuGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 3776 | 0.69 | 0.675262 |
Target: 5'- -aUCGcgGU-CGGCGcGCG-GCUCGACg -3' miRNA: 3'- ugAGCuaCAuGCUGC-UGCaCGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 3977 | 0.66 | 0.80394 |
Target: 5'- uGCUCGcga-ACGAggaGGCGUGCUUGAUg -3' miRNA: 3'- -UGAGCuacaUGCUg--CUGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 5099 | 0.69 | 0.675262 |
Target: 5'- -gUCGAucuaccUGgACGACGAgGUGCUCGcCa -3' miRNA: 3'- ugAGCU------ACaUGCUGCUgCACGAGCuG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 6314 | 0.72 | 0.493307 |
Target: 5'- cAC-CGAcguggcgcaagcUGUACGGCGGCGUucugccgaacaagaGCUCGACu -3' miRNA: 3'- -UGaGCU------------ACAUGCUGCUGCA--------------CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 7692 | 0.72 | 0.497571 |
Target: 5'- cUUCGGUGgcgcccgcaaguacgAgGGCGAUGUGUUCGACa -3' miRNA: 3'- uGAGCUACa--------------UgCUGCUGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 8033 | 1.1 | 0.001298 |
Target: 5'- aACUCGAUGUACGACGACGUGCUCGACg -3' miRNA: 3'- -UGAGCUACAUGCUGCUGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 8481 | 0.67 | 0.752461 |
Target: 5'- cGCUCGgcG-ACGAC-ACGUgGCUCGAg -3' miRNA: 3'- -UGAGCuaCaUGCUGcUGCA-CGAGCUg -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 8510 | 0.67 | 0.777674 |
Target: 5'- cGCUCGAUcgcGUugacgcggaucgcuCGGCGAuagccugguCGUGCUCGGCc -3' miRNA: 3'- -UGAGCUA---CAu-------------GCUGCU---------GCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 9584 | 0.69 | 0.652629 |
Target: 5'- uGC-CGGUGaGCguGACGACgGUGUUCGGCa -3' miRNA: 3'- -UGaGCUACaUG--CUGCUG-CACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 10360 | 0.67 | 0.783839 |
Target: 5'- cGC-CGGUaucacGUACaACGGCGUGC-CGACg -3' miRNA: 3'- -UGaGCUA-----CAUGcUGCUGCACGaGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 10989 | 0.74 | 0.377289 |
Target: 5'- cGCUCGucgaggAUGGCGugGUGCUCGGg -3' miRNA: 3'- -UGAGCuaca--UGCUGCugCACGAGCUg -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 11766 | 0.69 | 0.62878 |
Target: 5'- cAC-CGGUGggaucuCGGCGGCGUccucgcuGCUCGGCg -3' miRNA: 3'- -UGaGCUACau----GCUGCUGCA-------CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 16587 | 0.66 | 0.80394 |
Target: 5'- cACUCGgcGccgGCGGCGACGcgaucgGCcugCGACa -3' miRNA: 3'- -UGAGCuaCa--UGCUGCUGCa-----CGa--GCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 16861 | 0.7 | 0.595887 |
Target: 5'- ---aGGUGUACcGCGGCGcggacgGCUCGACa -3' miRNA: 3'- ugagCUACAUGcUGCUGCa-----CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 16983 | 0.67 | 0.763068 |
Target: 5'- aGCUCGAc-UACGGCuACGUGC-CGAUc -3' miRNA: 3'- -UGAGCUacAUGCUGcUGCACGaGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 17529 | 0.68 | 0.69772 |
Target: 5'- cGCUCGAgg-GCGGCauGACGUcGgUCGGCg -3' miRNA: 3'- -UGAGCUacaUGCUG--CUGCA-CgAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 18494 | 0.66 | 0.79398 |
Target: 5'- aAC-CGAUGUuCGACGACGUGaagcacgCGGg -3' miRNA: 3'- -UGaGCUACAuGCUGCUGCACga-----GCUg -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 18545 | 0.71 | 0.506148 |
Target: 5'- uCUCGGUGgGCGGCGGCGccgGCUucgcgggCGACa -3' miRNA: 3'- uGAGCUACaUGCUGCUGCa--CGA-------GCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 19658 | 0.67 | 0.773531 |
Target: 5'- cUUCGuaccGUACGAacgcgacagcgUGACGcUGCUCGACg -3' miRNA: 3'- uGAGCua--CAUGCU-----------GCUGC-ACGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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