Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28122 | 3' | -52.3 | NC_005887.1 | + | 23126 | 0.66 | 0.80394 |
Target: 5'- gGCUgGcgGUGaggUGACGGCGUGacgaucCUCGACc -3' miRNA: 3'- -UGAgCuaCAU---GCUGCUGCAC------GAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 17529 | 0.68 | 0.69772 |
Target: 5'- cGCUCGAgg-GCGGCauGACGUcGgUCGGCg -3' miRNA: 3'- -UGAGCUacaUGCUG--CUGCA-CgAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 35558 | 0.68 | 0.719907 |
Target: 5'- uGCUCGAcaUGUGCGGCGAgCGccggGCacaCGGCc -3' miRNA: 3'- -UGAGCU--ACAUGCUGCU-GCa---CGa--GCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 41957 | 0.67 | 0.752461 |
Target: 5'- uGCUCGcgugGUGCGugcGCGGCGcGCUCGcCu -3' miRNA: 3'- -UGAGCua--CAUGC---UGCUGCaCGAGCuG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 8481 | 0.67 | 0.752461 |
Target: 5'- cGCUCGgcG-ACGAC-ACGUgGCUCGAg -3' miRNA: 3'- -UGAGCuaCaUGCUGcUGCA-CGAGCUg -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 16983 | 0.67 | 0.763068 |
Target: 5'- aGCUCGAc-UACGGCuACGUGC-CGAUc -3' miRNA: 3'- -UGAGCUacAUGCUGcUGCACGaGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 10360 | 0.67 | 0.783839 |
Target: 5'- cGC-CGGUaucacGUACaACGGCGUGC-CGACg -3' miRNA: 3'- -UGaGCUA-----CAUGcUGCUGCACGaGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 18494 | 0.66 | 0.79398 |
Target: 5'- aAC-CGAUGUuCGACGACGUGaagcacgCGGg -3' miRNA: 3'- -UGaGCUACAuGCUGCUGCACga-----GCUg -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 3977 | 0.66 | 0.80394 |
Target: 5'- uGCUCGcga-ACGAggaGGCGUGCUUGAUg -3' miRNA: 3'- -UGAGCuacaUGCUg--CUGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 5099 | 0.69 | 0.675262 |
Target: 5'- -gUCGAucuaccUGgACGACGAgGUGCUCGcCa -3' miRNA: 3'- ugAGCU------ACaUGCUGCUgCACGAGCuG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 11766 | 0.69 | 0.62878 |
Target: 5'- cAC-CGGUGggaucuCGGCGGCGUccucgcuGCUCGGCg -3' miRNA: 3'- -UGaGCUACau----GCUGCUGCA-------CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 16861 | 0.7 | 0.595887 |
Target: 5'- ---aGGUGUACcGCGGCGcggacgGCUCGACa -3' miRNA: 3'- ugagCUACAUGcUGCUGCa-----CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 40483 | 0.76 | 0.286258 |
Target: 5'- aGCUCGAUuacgaggcGUggcGCGACGuCGUGUUCGGCa -3' miRNA: 3'- -UGAGCUA--------CA---UGCUGCuGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 10989 | 0.74 | 0.377289 |
Target: 5'- cGCUCGucgaggAUGGCGugGUGCUCGGg -3' miRNA: 3'- -UGAGCuaca--UGCUGCugCACGAGCUg -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 6314 | 0.72 | 0.493307 |
Target: 5'- cAC-CGAcguggcgcaagcUGUACGGCGGCGUucugccgaacaagaGCUCGACu -3' miRNA: 3'- -UGaGCU------------ACAUGCUGCUGCA--------------CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 7692 | 0.72 | 0.497571 |
Target: 5'- cUUCGGUGgcgcccgcaaguacgAgGGCGAUGUGUUCGACa -3' miRNA: 3'- uGAGCUACa--------------UgCUGCUGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 18545 | 0.71 | 0.506148 |
Target: 5'- uCUCGGUGgGCGGCGGCGccgGCUucgcgggCGACa -3' miRNA: 3'- uGAGCUACaUGCUGCUGCa--CGA-------GCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 40794 | 0.71 | 0.518043 |
Target: 5'- -gUCGAgGUucgugGCGGCGACGcgccGCUCGACg -3' miRNA: 3'- ugAGCUaCA-----UGCUGCUGCa---CGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 20470 | 0.71 | 0.547686 |
Target: 5'- cGCUCGGcaaUGUguugauggcugcucAgGGCGGCGUGUUUGACa -3' miRNA: 3'- -UGAGCU---ACA--------------UgCUGCUGCACGAGCUG- -5' |
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28122 | 3' | -52.3 | NC_005887.1 | + | 41504 | 0.7 | 0.562151 |
Target: 5'- gGCUCGA---ACGGCaagucGACgGUGCUCGGCa -3' miRNA: 3'- -UGAGCUacaUGCUG-----CUG-CACGAGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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