miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28122 3' -52.3 NC_005887.1 + 16587 0.66 0.80394
Target:  5'- cACUCGgcGccgGCGGCGACGcgaucgGCcugCGACa -3'
miRNA:   3'- -UGAGCuaCa--UGCUGCUGCa-----CGa--GCUG- -5'
28122 3' -52.3 NC_005887.1 + 3562 0.69 0.652629
Target:  5'- --aCGAUGcccuugcCGACGuCGUGCUCGAUc -3'
miRNA:   3'- ugaGCUACau-----GCUGCuGCACGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 36294 0.68 0.69772
Target:  5'- gGCgaagUGGUGccuCGAaaGCGUGCUCGACg -3'
miRNA:   3'- -UGa---GCUACau-GCUgcUGCACGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 34034 0.68 0.719907
Target:  5'- cGC-CGGUGcugACGgacgccgcacGCGACGUGCUCGcCg -3'
miRNA:   3'- -UGaGCUACa--UGC----------UGCUGCACGAGCuG- -5'
28122 3' -52.3 NC_005887.1 + 31343 0.67 0.752461
Target:  5'- aGCUCGAcgagGCGAuCGACGcgGC-CGACg -3'
miRNA:   3'- -UGAGCUaca-UGCU-GCUGCa-CGaGCUG- -5'
28122 3' -52.3 NC_005887.1 + 40433 0.67 0.763068
Target:  5'- cCUCGcgc-GCGACGGCGgcacggccgcGCUCGACg -3'
miRNA:   3'- uGAGCuacaUGCUGCUGCa---------CGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 39902 0.72 0.485886
Target:  5'- -aUUGAUGUGCGACGGCG-GCcCGuCg -3'
miRNA:   3'- ugAGCUACAUGCUGCUGCaCGaGCuG- -5'
28122 3' -52.3 NC_005887.1 + 9584 0.69 0.652629
Target:  5'- uGC-CGGUGaGCguGACGACgGUGUUCGGCa -3'
miRNA:   3'- -UGaGCUACaUG--CUGCUG-CACGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 30644 0.67 0.752461
Target:  5'- gGCUCGAaGcgACGAUGACcaGCUCGuCg -3'
miRNA:   3'- -UGAGCUaCa-UGCUGCUGcaCGAGCuG- -5'
28122 3' -52.3 NC_005887.1 + 21848 0.67 0.763068
Target:  5'- -gUUGAUGc-CGGCGAUGaUGCUCGAa -3'
miRNA:   3'- ugAGCUACauGCUGCUGC-ACGAGCUg -5'
28122 3' -52.3 NC_005887.1 + 8510 0.67 0.777674
Target:  5'- cGCUCGAUcgcGUugacgcggaucgcuCGGCGAuagccugguCGUGCUCGGCc -3'
miRNA:   3'- -UGAGCUA---CAu-------------GCUGCU---------GCACGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 19658 0.67 0.773531
Target:  5'- cUUCGuaccGUACGAacgcgacagcgUGACGcUGCUCGACg -3'
miRNA:   3'- uGAGCua--CAUGCU-----------GCUGC-ACGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 3776 0.69 0.675262
Target:  5'- -aUCGcgGU-CGGCGcGCG-GCUCGACg -3'
miRNA:   3'- ugAGCuaCAuGCUGC-UGCaCGAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 10989 0.74 0.377289
Target:  5'- cGCUCGucgaggAUGGCGugGUGCUCGGg -3'
miRNA:   3'- -UGAGCuaca--UGCUGCugCACGAGCUg -5'
28122 3' -52.3 NC_005887.1 + 18545 0.71 0.506148
Target:  5'- uCUCGGUGgGCGGCGGCGccgGCUucgcgggCGACa -3'
miRNA:   3'- uGAGCUACaUGCUGCUGCa--CGA-------GCUG- -5'
28122 3' -52.3 NC_005887.1 + 41957 0.67 0.752461
Target:  5'- uGCUCGcgugGUGCGugcGCGGCGcGCUCGcCu -3'
miRNA:   3'- -UGAGCua--CAUGC---UGCUGCaCGAGCuG- -5'
28122 3' -52.3 NC_005887.1 + 35558 0.68 0.719907
Target:  5'- uGCUCGAcaUGUGCGGCGAgCGccggGCacaCGGCc -3'
miRNA:   3'- -UGAGCU--ACAUGCUGCU-GCa---CGa--GCUG- -5'
28122 3' -52.3 NC_005887.1 + 17529 0.68 0.69772
Target:  5'- cGCUCGAgg-GCGGCauGACGUcGgUCGGCg -3'
miRNA:   3'- -UGAGCUacaUGCUG--CUGCA-CgAGCUG- -5'
28122 3' -52.3 NC_005887.1 + 5099 0.69 0.675262
Target:  5'- -gUCGAucuaccUGgACGACGAgGUGCUCGcCa -3'
miRNA:   3'- ugAGCU------ACaUGCUGCUgCACGAGCuG- -5'
28122 3' -52.3 NC_005887.1 + 40794 0.71 0.518043
Target:  5'- -gUCGAgGUucgugGCGGCGACGcgccGCUCGACg -3'
miRNA:   3'- ugAGCUaCA-----UGCUGCUGCa---CGAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.