miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28123 5' -58.4 NC_005887.1 + 33528 0.66 0.517484
Target:  5'- cGGCgaucACCGugaGCGCC--UGCuUCUGGUCGg -3'
miRNA:   3'- cCCG----UGGC---CGCGGcaAUG-AGACCAGC- -5'
28123 5' -58.4 NC_005887.1 + 38305 0.66 0.516444
Target:  5'- aGGGUGCCGuCGCCGUUgucgaucaccgGCUCaggaaggUGGUgGg -3'
miRNA:   3'- -CCCGUGGCcGCGGCAA-----------UGAG-------ACCAgC- -5'
28123 5' -58.4 NC_005887.1 + 22145 0.66 0.476601
Target:  5'- aGGGCcccgaCGGcCGCCGUg---CUGGUUGu -3'
miRNA:   3'- -CCCGug---GCC-GCGGCAaugaGACCAGC- -5'
28123 5' -58.4 NC_005887.1 + 33983 0.66 0.466629
Target:  5'- -aGCACCGGCGCCGUaucacGCUCa----- -3'
miRNA:   3'- ccCGUGGCCGCGGCAa----UGAGaccagc -5'
28123 5' -58.4 NC_005887.1 + 40766 0.66 0.466629
Target:  5'- uGGcGCGCCGcGCGCCGccgaGC-CggcGGUCGa -3'
miRNA:   3'- -CC-CGUGGC-CGCGGCaa--UGaGa--CCAGC- -5'
28123 5' -58.4 NC_005887.1 + 4682 0.66 0.465638
Target:  5'- cGGcCACCGGCGCCGcggcgagcaucugUUGCaUCUGcG-CGg -3'
miRNA:   3'- cCC-GUGGCCGCGGC-------------AAUG-AGAC-CaGC- -5'
28123 5' -58.4 NC_005887.1 + 21266 0.67 0.456767
Target:  5'- gGGGCACCgcggcGGCGgCGUaUGCgcugCUGG-CGu -3'
miRNA:   3'- -CCCGUGG-----CCGCgGCA-AUGa---GACCaGC- -5'
28123 5' -58.4 NC_005887.1 + 9159 0.67 0.427872
Target:  5'- cGGCGCCGGUGCCc--GCgCUGG-Ca -3'
miRNA:   3'- cCCGUGGCCGCGGcaaUGaGACCaGc -5'
28123 5' -58.4 NC_005887.1 + 7339 0.67 0.418482
Target:  5'- cGGGCgGCCGGgGCCGaUG-UCgcGGUCGc -3'
miRNA:   3'- -CCCG-UGGCCgCGGCaAUgAGa-CCAGC- -5'
28123 5' -58.4 NC_005887.1 + 12479 0.67 0.40922
Target:  5'- -cGCGCgCGGUGUCGUUGCccugCUGGUa- -3'
miRNA:   3'- ccCGUG-GCCGCGGCAAUGa---GACCAgc -5'
28123 5' -58.4 NC_005887.1 + 792 0.68 0.382214
Target:  5'- -aGCACCGGUGCUGgUACgagaucagCUGGUUc -3'
miRNA:   3'- ccCGUGGCCGCGGCaAUGa-------GACCAGc -5'
28123 5' -58.4 NC_005887.1 + 21579 0.68 0.373479
Target:  5'- cGGCAgCCGGCGUCGUUGCgccgauugCcGG-CGg -3'
miRNA:   3'- cCCGU-GGCCGCGGCAAUGa-------GaCCaGC- -5'
28123 5' -58.4 NC_005887.1 + 18551 0.69 0.331876
Target:  5'- uGGGCGgCGGCGCCGgc-UUCgcgGG-CGa -3'
miRNA:   3'- -CCCGUgGCCGCGGCaauGAGa--CCaGC- -5'
28123 5' -58.4 NC_005887.1 + 36103 0.71 0.252677
Target:  5'- aGGCcuugcgccucGCCGGCGCCGaggugACgcugCUGGUUGa -3'
miRNA:   3'- cCCG----------UGGCCGCGGCaa---UGa---GACCAGC- -5'
28123 5' -58.4 NC_005887.1 + 41727 0.8 0.060626
Target:  5'- cGGGCGgcgauccgaucCCGGCGCgCGg-GCUCUGGUCGa -3'
miRNA:   3'- -CCCGU-----------GGCCGCG-GCaaUGAGACCAGC- -5'
28123 5' -58.4 NC_005887.1 + 9103 1.1 0.000343
Target:  5'- cGGGCACCGGCGCCGUUACUCUGGUCGc -3'
miRNA:   3'- -CCCGUGGCCGCGGCAAUGAGACCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.