Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28124 | 3' | -60.3 | NC_005887.1 | + | 28625 | 0.68 | 0.309538 |
Target: 5'- aGCGGgcGGCGACGccuacaaauucAGCaGCCCGGCgCGc -3' miRNA: 3'- aUGCCa-CCGCUGC-----------UUGcUGGGCCG-GC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 40896 | 0.68 | 0.309538 |
Target: 5'- gACGGUGaCGACGAGCcGCCgaaGGCUa -3' miRNA: 3'- aUGCCACcGCUGCUUGcUGGg--CCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 13182 | 0.68 | 0.31709 |
Target: 5'- aGCGG-GaGCGGuCGAGCaGGCCgcCGGCCGa -3' miRNA: 3'- aUGCCaC-CGCU-GCUUG-CUGG--GCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 20688 | 0.67 | 0.332608 |
Target: 5'- gACGGUGGCuACGcauGCGGuuCGGUCa -3' miRNA: 3'- aUGCCACCGcUGCu--UGCUggGCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 14911 | 0.67 | 0.340574 |
Target: 5'- cUGCGGUGuGCacgcccGCGAACGugCCcGCCa -3' miRNA: 3'- -AUGCCAC-CGc-----UGCUUGCugGGcCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 16005 | 0.67 | 0.340574 |
Target: 5'- gGCGcGUGGcCGGCGcauCGAUuCCGGCCc -3' miRNA: 3'- aUGC-CACC-GCUGCuu-GCUG-GGCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 12565 | 0.67 | 0.343798 |
Target: 5'- gACGGccgccggcaugcgcaUGGUGucCGc-CGACCCGGCCGc -3' miRNA: 3'- aUGCC---------------ACCGCu-GCuuGCUGGGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 41600 | 0.67 | 0.356916 |
Target: 5'- gGCGGcccagGuGCGGCGGcCGGCgCGGCCc -3' miRNA: 3'- aUGCCa----C-CGCUGCUuGCUGgGCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 41719 | 0.67 | 0.356916 |
Target: 5'- gGCGaugacgGGCGGCGAucCGAuCCCGGCgCGc -3' miRNA: 3'- aUGCca----CCGCUGCUu-GCU-GGGCCG-GC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 28062 | 0.67 | 0.365291 |
Target: 5'- aACGccGGcCGACGAcgcgauuCGGCCCGaGCCGg -3' miRNA: 3'- aUGCcaCC-GCUGCUu------GCUGGGC-CGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 39771 | 0.66 | 0.373801 |
Target: 5'- --aGGUGGCGGCGGGCacucgcgauaccGACCCaauuuGCUGa -3' miRNA: 3'- augCCACCGCUGCUUG------------CUGGGc----CGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 27399 | 0.66 | 0.382444 |
Target: 5'- cUGCGcGUGGCG-CaguCGACgUGGCCGg -3' miRNA: 3'- -AUGC-CACCGCuGcuuGCUGgGCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 5812 | 0.66 | 0.382444 |
Target: 5'- gACGGcGGCGAuCGAGuCGGCgCgGGUCGc -3' miRNA: 3'- aUGCCaCCGCU-GCUU-GCUG-GgCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 31319 | 0.66 | 0.391219 |
Target: 5'- -cCGGUGGUcACGucccacgugcCGACCgGGCCGu -3' miRNA: 3'- auGCCACCGcUGCuu--------GCUGGgCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 40600 | 0.66 | 0.391219 |
Target: 5'- cGCGGUuccuCGACGAGCGugUgUGGCCGc -3' miRNA: 3'- aUGCCAcc--GCUGCUUGCugG-GCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 24649 | 0.66 | 0.403723 |
Target: 5'- cACGGUGGUGA-GAAucCGcuucgacauuguccaGCCgCGGCCGg -3' miRNA: 3'- aUGCCACCGCUgCUU--GC---------------UGG-GCCGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 39917 | 0.66 | 0.40825 |
Target: 5'- aGCGGUGaGCGGuCGAuugauguGCGACggCGGCCc -3' miRNA: 3'- aUGCCAC-CGCU-GCU-------UGCUGg-GCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 16582 | 0.66 | 0.409159 |
Target: 5'- gGCGccGGCGGCGAcGCGAU-CGGCCu -3' miRNA: 3'- aUGCcaCCGCUGCU-UGCUGgGCCGGc -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 5907 | 0.66 | 0.409159 |
Target: 5'- cGCGGUGaGCucCGcuucgcccuucGCGACCCGcGCCGa -3' miRNA: 3'- aUGCCAC-CGcuGCu----------UGCUGGGC-CGGC- -5' |
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28124 | 3' | -60.3 | NC_005887.1 | + | 22261 | 0.66 | 0.409159 |
Target: 5'- gACGGUGGCG-CGcagcaGGCGAUcggauuucucgUCGGCCu -3' miRNA: 3'- aUGCCACCGCuGC-----UUGCUG-----------GGCCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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