miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 3' -60.3 NC_005887.1 + 16005 0.67 0.340574
Target:  5'- gGCGcGUGGcCGGCGcauCGAUuCCGGCCc -3'
miRNA:   3'- aUGC-CACC-GCUGCuu-GCUG-GGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 16582 0.66 0.409159
Target:  5'- gGCGccGGCGGCGAcGCGAU-CGGCCu -3'
miRNA:   3'- aUGCcaCCGCUGCU-UGCUGgGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 19186 0.66 0.409159
Target:  5'- aGCGGcgcgGGCGugGAgacagGCGGCgCGGUUa -3'
miRNA:   3'- aUGCCa---CCGCugCU-----UGCUGgGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 20688 0.67 0.332608
Target:  5'- gACGGUGGCuACGcauGCGGuuCGGUCa -3'
miRNA:   3'- aUGCCACCGcUGCu--UGCUggGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 22261 0.66 0.409159
Target:  5'- gACGGUGGCG-CGcagcaGGCGAUcggauuucucgUCGGCCu -3'
miRNA:   3'- aUGCCACCGCuGC-----UUGCUG-----------GGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 23027 0.69 0.254045
Target:  5'- gGCGGUGGCGAagguauCGAACGuaUgGGCCa -3'
miRNA:   3'- aUGCCACCGCU------GCUUGCugGgCCGGc -5'
28124 3' -60.3 NC_005887.1 + 24636 0.68 0.302123
Target:  5'- cGCaGGUgugaagcugacGGCGAucaUGGGCG-CCCGGCCGa -3'
miRNA:   3'- aUG-CCA-----------CCGCU---GCUUGCuGGGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 24649 0.66 0.403723
Target:  5'- cACGGUGGUGA-GAAucCGcuucgacauuguccaGCCgCGGCCGg -3'
miRNA:   3'- aUGCCACCGCUgCUU--GC---------------UGG-GCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 26204 0.71 0.18156
Target:  5'- aACGG-GGCGGCGGugG--CCGGCCu -3'
miRNA:   3'- aUGCCaCCGCUGCUugCugGGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 27399 0.66 0.382444
Target:  5'- cUGCGcGUGGCG-CaguCGACgUGGCCGg -3'
miRNA:   3'- -AUGC-CACCGCuGcuuGCUGgGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 28062 0.67 0.365291
Target:  5'- aACGccGGcCGACGAcgcgauuCGGCCCGaGCCGg -3'
miRNA:   3'- aUGCcaCC-GCUGCUu------GCUGGGC-CGGC- -5'
28124 3' -60.3 NC_005887.1 + 28625 0.68 0.309538
Target:  5'- aGCGGgcGGCGACGccuacaaauucAGCaGCCCGGCgCGc -3'
miRNA:   3'- aUGCCa-CCGCUGC-----------UUGcUGGGCCG-GC- -5'
28124 3' -60.3 NC_005887.1 + 30475 0.71 0.186414
Target:  5'- gGCGGUGcGCGAC--GCGGCCCGuGCg- -3'
miRNA:   3'- aUGCCAC-CGCUGcuUGCUGGGC-CGgc -5'
28124 3' -60.3 NC_005887.1 + 31319 0.66 0.391219
Target:  5'- -cCGGUGGUcACGucccacgugcCGACCgGGCCGu -3'
miRNA:   3'- auGCCACCGcUGCuu--------GCUGGgCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 31411 0.69 0.247714
Target:  5'- gAC-GUGGgccauCGACG-ACGGCCCGGUCGg -3'
miRNA:   3'- aUGcCACC-----GCUGCuUGCUGGGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 32286 0.71 0.196467
Target:  5'- --aGGUGGCggguuugauGACGAGCGGCaccuCUGGCCGc -3'
miRNA:   3'- augCCACCG---------CUGCUUGCUG----GGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 32418 0.66 0.427602
Target:  5'- gAC-GUGGcCGGCG-GCGAUgUGGCCGg -3'
miRNA:   3'- aUGcCACC-GCUGCuUGCUGgGCCGGC- -5'
28124 3' -60.3 NC_005887.1 + 34105 0.66 0.418319
Target:  5'- aGCGGUGaCGcCGAGCG-CUCGGCa- -3'
miRNA:   3'- aUGCCACcGCuGCUUGCuGGGCCGgc -5'
28124 3' -60.3 NC_005887.1 + 34389 0.71 0.176817
Target:  5'- gUGCGGccgGGCG-CGA--GGCCCGGCCu -3'
miRNA:   3'- -AUGCCa--CCGCuGCUugCUGGGCCGGc -5'
28124 3' -60.3 NC_005887.1 + 38528 0.66 0.427602
Target:  5'- gGCGGguagggugGGCGcuuacaccaGCGGGCGcCaCUGGCCGg -3'
miRNA:   3'- aUGCCa-------CCGC---------UGCUUGCuG-GGCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.