Results 21 - 40 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28124 | 5' | -56.4 | NC_005887.1 | + | 29415 | 0.66 | 0.588784 |
Target: 5'- gGCUGCCGggUucuCCG-CGUaC-CGCUa -3' miRNA: 3'- aCGACGGCuuGu--GGCaGCA-GuGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 11940 | 0.66 | 0.593222 |
Target: 5'- cGCUGCCGAACgacgaaagaccGCCGagCGUCGaaaacgauccgcccgUGCUg -3' miRNA: 3'- aCGACGGCUUG-----------UGGCa-GCAGU---------------GCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 423 | 0.66 | 0.588784 |
Target: 5'- cGC-GCCGccCGCUGUUGcUGCGCUCg -3' miRNA: 3'- aCGaCGGCuuGUGGCAGCaGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 1536 | 0.66 | 0.588784 |
Target: 5'- cUGCUGUCGAcgACCG-CGaaggaCugGCUCg -3' miRNA: 3'- -ACGACGGCUugUGGCaGCa----GugCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 36098 | 0.66 | 0.555733 |
Target: 5'- uUGCgccucGCCG-GCGCCGagGUgACGCUg -3' miRNA: 3'- -ACGa----CGGCuUGUGGCagCAgUGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 2253 | 0.67 | 0.523242 |
Target: 5'- cGCUGcCCGAuCACCGcggccggCGUCAgGC-Cg -3' miRNA: 3'- aCGAC-GGCUuGUGGCa------GCAGUgCGaG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 39476 | 0.67 | 0.501991 |
Target: 5'- cGCgagaUGCCGAACGCgGUCGcgacCACGgUUg -3' miRNA: 3'- aCG----ACGGCUUGUGgCAGCa---GUGCgAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 7814 | 0.67 | 0.500938 |
Target: 5'- -cUUGCCGAuCACC-UCGcccuuuuUCGCGCUCg -3' miRNA: 3'- acGACGGCUuGUGGcAGC-------AGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 3233 | 0.67 | 0.491508 |
Target: 5'- aGCUGcCCGAAC-UUGUCGagGCGCg- -3' miRNA: 3'- aCGAC-GGCUUGuGGCAGCagUGCGag -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 6537 | 0.67 | 0.490465 |
Target: 5'- cGCccccGCCGAAUucacgggGCUGUCGcCGCGCUa -3' miRNA: 3'- aCGa---CGGCUUG-------UGGCAGCaGUGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 14711 | 0.67 | 0.481126 |
Target: 5'- gGCggGCCGGGCGCgG-CGaUCGCGCa- -3' miRNA: 3'- aCGa-CGGCUUGUGgCaGC-AGUGCGag -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 28415 | 0.67 | 0.501991 |
Target: 5'- cGCaGCCGAGCGCgCGcaggCGcUCGUGCUCg -3' miRNA: 3'- aCGaCGGCUUGUG-GCa---GC-AGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 11584 | 0.67 | 0.491508 |
Target: 5'- gGCUucaacCCGAACACCGgaUCG--GCGCUCg -3' miRNA: 3'- aCGAc----GGCUUGUGGC--AGCagUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 17388 | 0.67 | 0.491508 |
Target: 5'- cGCUGuuGAACGCgcugGUCGaUCACGUc- -3' miRNA: 3'- aCGACggCUUGUGg---CAGC-AGUGCGag -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 29391 | 0.67 | 0.533998 |
Target: 5'- gGCccaUGCCG-GCGCgGUCGcgaUCAgGCUCg -3' miRNA: 3'- aCG---ACGGCuUGUGgCAGC---AGUgCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 29768 | 0.67 | 0.523242 |
Target: 5'- aGCUGaucgCGAGgauCGCCG-CGUCGCGCa- -3' miRNA: 3'- aCGACg---GCUU---GUGGCaGCAGUGCGag -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 1353 | 0.67 | 0.501991 |
Target: 5'- gGCgagacGCuCGAGCGcuacauccugucCCGcgCGUCGCGCUCg -3' miRNA: 3'- aCGa----CG-GCUUGU------------GGCa-GCAGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 30732 | 0.67 | 0.512571 |
Target: 5'- cGCUGCguggccuucgCGAcuuCGCCGUCGgUCA-GCUCg -3' miRNA: 3'- aCGACG----------GCUu--GUGGCAGC-AGUgCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 16252 | 0.67 | 0.512571 |
Target: 5'- aGC-GCaCGGGCACCGUCGcCGaGCUg -3' miRNA: 3'- aCGaCG-GCUUGUGGCAGCaGUgCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 682 | 0.67 | 0.523242 |
Target: 5'- gUGCUGCUGcuCGCCGa-GUCGaugcUGCUCg -3' miRNA: 3'- -ACGACGGCuuGUGGCagCAGU----GCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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