miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 11584 0.67 0.491508
Target:  5'- gGCUucaacCCGAACACCGgaUCG--GCGCUCg -3'
miRNA:   3'- aCGAc----GGCUUGUGGC--AGCagUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 11593 0.7 0.340469
Target:  5'- aGCUGCUGAucaGCuugACCG-CGUUGCGCUUc -3'
miRNA:   3'- aCGACGGCU---UG---UGGCaGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 11792 0.68 0.440727
Target:  5'- cGCUGCUcGGCGgCGUCGguucgUACGCUa -3'
miRNA:   3'- aCGACGGcUUGUgGCAGCa----GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 11940 0.66 0.593222
Target:  5'- cGCUGCCGAACgacgaaagaccGCCGagCGUCGaaaacgauccgcccgUGCUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCa-GCAGU---------------GCGAg -5'
28124 5' -56.4 NC_005887.1 + 12321 0.66 0.565599
Target:  5'- cGCUGCagcucagCGAACugCGUaCGU--CGCUCg -3'
miRNA:   3'- aCGACG-------GCUUGugGCA-GCAguGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 12756 0.71 0.311446
Target:  5'- cGCUGCaacgcgaGAACACCGcCGUCgacuugcacaaucagGCGCUg -3'
miRNA:   3'- aCGACGg------CUUGUGGCaGCAG---------------UGCGAg -5'
28124 5' -56.4 NC_005887.1 + 13138 0.66 0.577718
Target:  5'- aGCgUGCCGGGCcUCGUC-UCGuCGCUUg -3'
miRNA:   3'- aCG-ACGGCUUGuGGCAGcAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 13369 0.73 0.225984
Target:  5'- cGUUGCCGAACGCCugGcCGaUCugGUUCa -3'
miRNA:   3'- aCGACGGCUUGUGG--CaGC-AGugCGAG- -5'
28124 5' -56.4 NC_005887.1 + 13424 0.69 0.383936
Target:  5'- cGCUGCUGAcgacgagcggcGCACCGcUCaG-CACGUUCa -3'
miRNA:   3'- aCGACGGCU-----------UGUGGC-AG-CaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 13498 0.66 0.577718
Target:  5'- gUGCUGagCGGuGCGCCGcUCGUCGCaGCa- -3'
miRNA:   3'- -ACGACg-GCU-UGUGGC-AGCAGUG-CGag -5'
28124 5' -56.4 NC_005887.1 + 14361 0.75 0.167629
Target:  5'- aGCgUGCCGGGCACCuGUUcgaGUCGcCGCUCg -3'
miRNA:   3'- aCG-ACGGCUUGUGG-CAG---CAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14607 0.79 0.092468
Target:  5'- cGCguacgGCCGucGGCGCCGUCGagggCGCGCUCa -3'
miRNA:   3'- aCGa----CGGC--UUGUGGCAGCa---GUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14711 0.67 0.481126
Target:  5'- gGCggGCCGGGCGCgG-CGaUCGCGCa- -3'
miRNA:   3'- aCGa-CGGCUUGUGgCaGC-AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 15597 0.66 0.566698
Target:  5'- aGCUGagaCGcAGCGCaCGggCGUCGCGCa- -3'
miRNA:   3'- aCGACg--GC-UUGUG-GCa-GCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 15638 0.68 0.459682
Target:  5'- gGCUcGCCGAucaggGCGCCGU-GUCGCagaugcgcgccgaGCUCg -3'
miRNA:   3'- aCGA-CGGCU-----UGUGGCAgCAGUG-------------CGAG- -5'
28124 5' -56.4 NC_005887.1 + 16252 0.67 0.512571
Target:  5'- aGC-GCaCGGGCACCGUCGcCGaGCUg -3'
miRNA:   3'- aCGaCG-GCUUGUGGCAGCaGUgCGAg -5'
28124 5' -56.4 NC_005887.1 + 17028 0.69 0.411726
Target:  5'- aGCUcGCCGAcauugccgcccGCGCgGUUGaaGCGCUCa -3'
miRNA:   3'- aCGA-CGGCU-----------UGUGgCAGCagUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 17059 0.66 0.54483
Target:  5'- cGCUugGgCGGACGCCGUCauGcCGCuGCUCg -3'
miRNA:   3'- aCGA--CgGCUUGUGGCAG--CaGUG-CGAG- -5'
28124 5' -56.4 NC_005887.1 + 17388 0.67 0.491508
Target:  5'- cGCUGuuGAACGCgcugGUCGaUCACGUc- -3'
miRNA:   3'- aCGACggCUUGUGg---CAGC-AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 19316 0.66 0.54483
Target:  5'- ---cGUCGAAgACCGUCGagaagGCGCUCg -3'
miRNA:   3'- acgaCGGCUUgUGGCAGCag---UGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.