miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 423 0.66 0.588784
Target:  5'- cGC-GCCGccCGCUGUUGcUGCGCUCg -3'
miRNA:   3'- aCGaCGGCuuGUGGCAGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 682 0.67 0.523242
Target:  5'- gUGCUGCUGcuCGCCGa-GUCGaugcUGCUCg -3'
miRNA:   3'- -ACGACGGCuuGUGGCagCAGU----GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 994 0.69 0.402324
Target:  5'- cGCaauUGCCGGcCGCCGUgCG-CGCGCUg -3'
miRNA:   3'- aCG---ACGGCUuGUGGCA-GCaGUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 1301 0.66 0.577718
Target:  5'- cGCgUGCUGAGCGCCG-CGcaGCGCcCg -3'
miRNA:   3'- aCG-ACGGCUUGUGGCaGCagUGCGaG- -5'
28124 5' -56.4 NC_005887.1 + 1353 0.67 0.501991
Target:  5'- gGCgagacGCuCGAGCGcuacauccugucCCGcgCGUCGCGCUCg -3'
miRNA:   3'- aCGa----CG-GCUUGU------------GGCa-GCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1536 0.66 0.588784
Target:  5'- cUGCUGUCGAcgACCG-CGaaggaCugGCUCg -3'
miRNA:   3'- -ACGACGGCUugUGGCaGCa----GugCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1541 0.72 0.251148
Target:  5'- aGC-GCCGcACGCCGUCGgcgUCGgGCUCc -3'
miRNA:   3'- aCGaCGGCuUGUGGCAGC---AGUgCGAG- -5'
28124 5' -56.4 NC_005887.1 + 2253 0.67 0.523242
Target:  5'- cGCUGcCCGAuCACCGcggccggCGUCAgGC-Cg -3'
miRNA:   3'- aCGAC-GGCUuGUGGCa------GCAGUgCGaG- -5'
28124 5' -56.4 NC_005887.1 + 2956 0.66 0.54483
Target:  5'- gGCgGCCGAcguguCCGUCGUCgccuGCGCg- -3'
miRNA:   3'- aCGaCGGCUugu--GGCAGCAG----UGCGag -5'
28124 5' -56.4 NC_005887.1 + 3233 0.67 0.491508
Target:  5'- aGCUGcCCGAAC-UUGUCGagGCGCg- -3'
miRNA:   3'- aCGAC-GGCUUGuGGCAGCagUGCGag -5'
28124 5' -56.4 NC_005887.1 + 4486 0.66 0.577718
Target:  5'- aGgUGCCGAACGgCGcgCGcaUCGCGCg- -3'
miRNA:   3'- aCgACGGCUUGUgGCa-GC--AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 6537 0.67 0.490465
Target:  5'- cGCccccGCCGAAUucacgggGCUGUCGcCGCGCUa -3'
miRNA:   3'- aCGa---CGGCUUG-------UGGCAGCaGUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 7123 0.72 0.26389
Target:  5'- cGCUGCaccgGAAUGCCGUCGaaggucaUCACGCg- -3'
miRNA:   3'- aCGACGg---CUUGUGGCAGC-------AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 7337 0.66 0.566698
Target:  5'- gGCgGCCGGG-GCCGaUGUCGCGgUCg -3'
miRNA:   3'- aCGaCGGCUUgUGGCaGCAGUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 7814 0.67 0.500938
Target:  5'- -cUUGCCGAuCACC-UCGcccuuuuUCGCGCUCg -3'
miRNA:   3'- acGACGGCUuGUGGcAGC-------AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 8467 0.67 0.491508
Target:  5'- gUGCUcgGCCcacGCGCCuugucgcuUCGUCGCGCUCu -3'
miRNA:   3'- -ACGA--CGGcu-UGUGGc-------AGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 8563 0.66 0.54483
Target:  5'- cGCaUGCCGAaggcaGCACCGcagcagguuUCGUUcgACGCUg -3'
miRNA:   3'- aCG-ACGGCU-----UGUGGC---------AGCAG--UGCGAg -5'
28124 5' -56.4 NC_005887.1 + 9076 0.76 0.141821
Target:  5'- gGCUGCagaGAAaa-CGUCGUCGCGCUUg -3'
miRNA:   3'- aCGACGg--CUUgugGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 9510 1.1 0.000425
Target:  5'- aUGCUGCCGAACACCGUCGUCACGCUCa -3'
miRNA:   3'- -ACGACGGCUUGUGGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 11124 0.66 0.566698
Target:  5'- aGCUGgCCGAgGCGCCGUgGcgGCGCa- -3'
miRNA:   3'- aCGAC-GGCU-UGUGGCAgCagUGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.