miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 6537 0.67 0.490465
Target:  5'- cGCccccGCCGAAUucacgggGCUGUCGcCGCGCUa -3'
miRNA:   3'- aCGa---CGGCUUG-------UGGCAGCaGUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 19573 0.69 0.402324
Target:  5'- gGCacGUCGAGCAgCGUCacgcuGUCGCGUUCg -3'
miRNA:   3'- aCGa-CGGCUUGUgGCAG-----CAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 994 0.69 0.402324
Target:  5'- cGCaauUGCCGGcCGCCGUgCG-CGCGCUg -3'
miRNA:   3'- aCG---ACGGCUuGUGGCA-GCaGUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 39785 0.69 0.411726
Target:  5'- cGCUcgcGCCGAucguuGCGCgCGUCGUCAC-UUCg -3'
miRNA:   3'- aCGA---CGGCU-----UGUG-GCAGCAGUGcGAG- -5'
28124 5' -56.4 NC_005887.1 + 11792 0.68 0.440727
Target:  5'- cGCUGCUcGGCGgCGUCGguucgUACGCUa -3'
miRNA:   3'- aCGACGGcUUGUgGCAGCa----GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 23395 0.68 0.450649
Target:  5'- cGCUGCCGcuggcagccugcAGCAgCG-CGUCGaucaGCUCg -3'
miRNA:   3'- aCGACGGC------------UUGUgGCaGCAGUg---CGAG- -5'
28124 5' -56.4 NC_005887.1 + 15638 0.68 0.459682
Target:  5'- gGCUcGCCGAucaggGCGCCGU-GUCGCagaugcgcgccgaGCUCg -3'
miRNA:   3'- aCGA-CGGCU-----UGUGGCAgCAGUG-------------CGAG- -5'
28124 5' -56.4 NC_005887.1 + 40269 0.68 0.460692
Target:  5'- gUGCUGCCGcugGCCGgcaaGUCGgugcCGCUCg -3'
miRNA:   3'- -ACGACGGCuugUGGCag--CAGU----GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14711 0.67 0.481126
Target:  5'- gGCggGCCGGGCGCgG-CGaUCGCGCa- -3'
miRNA:   3'- aCGa-CGGCUUGUGgCaGC-AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 38306 0.69 0.402324
Target:  5'- gGgUGCCGu-CGCCGUUGUCGaucaccgGCUCa -3'
miRNA:   3'- aCgACGGCuuGUGGCAGCAGUg------CGAG- -5'
28124 5' -56.4 NC_005887.1 + 13424 0.69 0.383936
Target:  5'- cGCUGCUGAcgacgagcggcGCACCGcUCaG-CACGUUCa -3'
miRNA:   3'- aCGACGGCU-----------UGUGGC-AG-CaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 33875 0.69 0.381227
Target:  5'- gGCaGCCGAcaGCGCUccgucgccguauugGUCGUCGUGCUCg -3'
miRNA:   3'- aCGaCGGCU--UGUGG--------------CAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34685 0.84 0.037174
Target:  5'- cGUUGUCGAGCagcagcgggcgGCCGUCGUCGCGCUUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14607 0.79 0.092468
Target:  5'- cGCguacgGCCGucGGCGCCGUCGagggCGCGCUCa -3'
miRNA:   3'- aCGa----CGGC--UUGUGGCAGCa---GUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14361 0.75 0.167629
Target:  5'- aGCgUGCCGGGCACCuGUUcgaGUCGcCGCUCg -3'
miRNA:   3'- aCG-ACGGCUUGUGG-CAG---CAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 24916 0.71 0.30834
Target:  5'- aGCaGCCGGaucgGCACCGUUGUCGauCGCg- -3'
miRNA:   3'- aCGaCGGCU----UGUGGCAGCAGU--GCGag -5'
28124 5' -56.4 NC_005887.1 + 12756 0.71 0.311446
Target:  5'- cGCUGCaacgcgaGAACACCGcCGUCgacuugcacaaucagGCGCUg -3'
miRNA:   3'- aCGACGg------CUUGUGGCaGCAG---------------UGCGAg -5'
28124 5' -56.4 NC_005887.1 + 40364 0.7 0.332214
Target:  5'- cGCgGCCGu--GCCGcUCGUCGCGCg- -3'
miRNA:   3'- aCGaCGGCuugUGGC-AGCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 41300 0.7 0.340469
Target:  5'- cUGCUGCCgccgggcaagGAACACCG-CaUCACGgUCg -3'
miRNA:   3'- -ACGACGG----------CUUGUGGCaGcAGUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 22114 0.7 0.366115
Target:  5'- cUGCUGCCGggUGCgauuggcUCGcugaUCGCGCUCg -3'
miRNA:   3'- -ACGACGGCuuGUGgc-----AGC----AGUGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.