miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 9510 1.1 0.000425
Target:  5'- aUGCUGCCGAACACCGUCGUCACGCUCa -3'
miRNA:   3'- -ACGACGGCUUGUGGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34685 0.84 0.037174
Target:  5'- cGUUGUCGAGCagcagcgggcgGCCGUCGUCGCGCUUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14607 0.79 0.092468
Target:  5'- cGCguacgGCCGucGGCGCCGUCGagggCGCGCUCa -3'
miRNA:   3'- aCGa----CGGC--UUGUGGCAGCa---GUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34172 0.78 0.103758
Target:  5'- -uCUGCCGAGCGCuCGgCGUCAcCGCUCa -3'
miRNA:   3'- acGACGGCUUGUG-GCaGCAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 9076 0.76 0.141821
Target:  5'- gGCUGCagaGAAaa-CGUCGUCGCGCUUg -3'
miRNA:   3'- aCGACGg--CUUgugGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34005 0.76 0.149992
Target:  5'- gUGCUcGCCGAGCGCCGUCGgCAgGUc- -3'
miRNA:   3'- -ACGA-CGGCUUGUGGCAGCaGUgCGag -5'
28124 5' -56.4 NC_005887.1 + 27853 0.75 0.154237
Target:  5'- cUGC-GUCG-GCGCCGUCGUCaugGCGCUCu -3'
miRNA:   3'- -ACGaCGGCuUGUGGCAGCAG---UGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 14361 0.75 0.167629
Target:  5'- aGCgUGCCGGGCACCuGUUcgaGUCGcCGCUCg -3'
miRNA:   3'- aCG-ACGGCUUGUGG-CAG---CAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 41577 0.74 0.187103
Target:  5'- -cUUGCCGAGCACCGUCGaCuugcCGUUCg -3'
miRNA:   3'- acGACGGCUUGUGGCAGCaGu---GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 21925 0.73 0.214223
Target:  5'- aGCUGCUGuGCGCCaGUCGUCAaCGUg- -3'
miRNA:   3'- aCGACGGCuUGUGG-CAGCAGU-GCGag -5'
28124 5' -56.4 NC_005887.1 + 13369 0.73 0.225984
Target:  5'- cGUUGCCGAACGCCugGcCGaUCugGUUCa -3'
miRNA:   3'- aCGACGGCUUGUGG--CaGC-AGugCGAG- -5'
28124 5' -56.4 NC_005887.1 + 40719 0.73 0.232068
Target:  5'- gUGCgGCCGGugAUCGgCG-CGCGCUCg -3'
miRNA:   3'- -ACGaCGGCUugUGGCaGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1541 0.72 0.251148
Target:  5'- aGC-GCCGcACGCCGUCGgcgUCGgGCUCc -3'
miRNA:   3'- aCGaCGGCuUGUGGCAGC---AGUgCGAG- -5'
28124 5' -56.4 NC_005887.1 + 7123 0.72 0.26389
Target:  5'- cGCUGCaccgGAAUGCCGUCGaaggucaUCACGCg- -3'
miRNA:   3'- aCGACGg---CUUGUGGCAGC-------AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 24916 0.71 0.30834
Target:  5'- aGCaGCCGGaucgGCACCGUUGUCGauCGCg- -3'
miRNA:   3'- aCGaCGGCU----UGUGGCAGCAGU--GCGag -5'
28124 5' -56.4 NC_005887.1 + 12756 0.71 0.311446
Target:  5'- cGCUGCaacgcgaGAACACCGcCGUCgacuugcacaaucagGCGCUg -3'
miRNA:   3'- aCGACGg------CUUGUGGCaGCAG---------------UGCGAg -5'
28124 5' -56.4 NC_005887.1 + 42042 0.71 0.31615
Target:  5'- gUGCUGCUGAuaggcgagcGCGCCG-CG-CACGCa- -3'
miRNA:   3'- -ACGACGGCU---------UGUGGCaGCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 32654 0.71 0.31615
Target:  5'- gGCUGCaCGuGCACUGgaacaugcgCGUCACGCa- -3'
miRNA:   3'- aCGACG-GCuUGUGGCa--------GCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 40364 0.7 0.332214
Target:  5'- cGCgGCCGu--GCCGcUCGUCGCGCg- -3'
miRNA:   3'- aCGaCGGCuugUGGC-AGCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 41300 0.7 0.340469
Target:  5'- cUGCUGCCgccgggcaagGAACACCG-CaUCACGgUCg -3'
miRNA:   3'- -ACGACGG----------CUUGUGGCaGcAGUGCgAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.