miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 11940 0.66 0.593222
Target:  5'- cGCUGCCGAACgacgaaagaccGCCGagCGUCGaaaacgauccgcccgUGCUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCa-GCAGU---------------GCGAg -5'
28124 5' -56.4 NC_005887.1 + 28489 0.68 0.470853
Target:  5'- cGCgaGCaCGAGCGCCuG-CG-CGCGCUCg -3'
miRNA:   3'- aCGa-CG-GCUUGUGG-CaGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 24066 0.68 0.43093
Target:  5'- gUGCgGCaggagauuccCGAGCGCCGcC-UCGCGCUCg -3'
miRNA:   3'- -ACGaCG----------GCUUGUGGCaGcAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34172 0.78 0.103758
Target:  5'- -uCUGCCGAGCGCuCGgCGUCAcCGCUCa -3'
miRNA:   3'- acGACGGCUUGUG-GCaGCAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 40991 0.66 0.566698
Target:  5'- cGUUGCCGAAC-UCGgugCG-CGCGCg- -3'
miRNA:   3'- aCGACGGCUUGuGGCa--GCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 7337 0.66 0.566698
Target:  5'- gGCgGCCGGG-GCCGaUGUCGCGgUCg -3'
miRNA:   3'- aCGaCGGCUUgUGGCaGCAGUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 31012 0.66 0.566698
Target:  5'- cGCgggcGCCGAcauCACCGcCGagCGCGCUg -3'
miRNA:   3'- aCGa---CGGCUu--GUGGCaGCa-GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 36098 0.66 0.555733
Target:  5'- uUGCgccucGCCG-GCGCCGagGUgACGCUg -3'
miRNA:   3'- -ACGa----CGGCuUGUGGCagCAgUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 38240 0.66 0.54483
Target:  5'- gGCcaUGCUGcACACCGcCuauuUCGCGCUCg -3'
miRNA:   3'- aCG--ACGGCuUGUGGCaGc---AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 8467 0.67 0.491508
Target:  5'- gUGCUcgGCCcacGCGCCuugucgcuUCGUCGCGCUCu -3'
miRNA:   3'- -ACGA--CGGcu-UGUGGc-------AGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 39476 0.67 0.501991
Target:  5'- cGCgagaUGCCGAACGCgGUCGcgacCACGgUUg -3'
miRNA:   3'- aCG----ACGGCUUGUGgCAGCa---GUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 2956 0.66 0.54483
Target:  5'- gGCgGCCGAcguguCCGUCGUCgccuGCGCg- -3'
miRNA:   3'- aCGaCGGCUugu--GGCAGCAG----UGCGag -5'
28124 5' -56.4 NC_005887.1 + 29415 0.66 0.588784
Target:  5'- gGCUGCCGggUucuCCG-CGUaC-CGCUa -3'
miRNA:   3'- aCGACGGCuuGu--GGCaGCA-GuGCGAg -5'
28124 5' -56.4 NC_005887.1 + 7814 0.67 0.500938
Target:  5'- -cUUGCCGAuCACC-UCGcccuuuuUCGCGCUCg -3'
miRNA:   3'- acGACGGCUuGUGGcAGC-------AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 1301 0.66 0.577718
Target:  5'- cGCgUGCUGAGCGCCG-CGcaGCGCcCg -3'
miRNA:   3'- aCG-ACGGCUUGUGGCaGCagUGCGaG- -5'
28124 5' -56.4 NC_005887.1 + 27105 0.66 0.54483
Target:  5'- gGCgGCagCGuGCGCgGUCG-CGCGCUCg -3'
miRNA:   3'- aCGaCG--GCuUGUGgCAGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 3233 0.67 0.491508
Target:  5'- aGCUGcCCGAAC-UUGUCGagGCGCg- -3'
miRNA:   3'- aCGAC-GGCUUGuGGCAGCagUGCGag -5'
28124 5' -56.4 NC_005887.1 + 26011 0.68 0.434833
Target:  5'- cGuCUGCCGGGcCACCGUCuacaaucugGugcgcgacggcaagcUCACGCUCg -3'
miRNA:   3'- aC-GACGGCUU-GUGGCAG---------C---------------AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 13498 0.66 0.577718
Target:  5'- gUGCUGagCGGuGCGCCGcUCGUCGCaGCa- -3'
miRNA:   3'- -ACGACg-GCU-UGUGGC-AGCAGUG-CGag -5'
28124 5' -56.4 NC_005887.1 + 23308 0.66 0.566698
Target:  5'- uUGCgcGCCGAcCGCCGcCGcUCGCGUg- -3'
miRNA:   3'- -ACGa-CGGCUuGUGGCaGC-AGUGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.