miRNA display CGI


Results 1 - 20 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 42042 0.71 0.31615
Target:  5'- gUGCUGCUGAuaggcgagcGCGCCG-CG-CACGCa- -3'
miRNA:   3'- -ACGACGGCU---------UGUGGCaGCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 41577 0.74 0.187103
Target:  5'- -cUUGCCGAGCACCGUCGaCuugcCGUUCg -3'
miRNA:   3'- acGACGGCUUGUGGCAGCaGu---GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 41300 0.7 0.340469
Target:  5'- cUGCUGCCgccgggcaagGAACACCG-CaUCACGgUCg -3'
miRNA:   3'- -ACGACGG----------CUUGUGGCaGcAGUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 40991 0.66 0.566698
Target:  5'- cGUUGCCGAAC-UCGgugCG-CGCGCg- -3'
miRNA:   3'- aCGACGGCUUGuGGCa--GCaGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 40719 0.73 0.232068
Target:  5'- gUGCgGCCGGugAUCGgCG-CGCGCUCg -3'
miRNA:   3'- -ACGaCGGCUugUGGCaGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 40563 0.68 0.421262
Target:  5'- --aUGCCGAACACgaCGUCGcgcCACGcCUCg -3'
miRNA:   3'- acgACGGCUUGUG--GCAGCa--GUGC-GAG- -5'
28124 5' -56.4 NC_005887.1 + 40364 0.7 0.332214
Target:  5'- cGCgGCCGu--GCCGcUCGUCGCGCg- -3'
miRNA:   3'- aCGaCGGCuugUGGC-AGCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 40304 0.69 0.402324
Target:  5'- -aUUGCCGAA-GCCGUCGcucggCACGCUg -3'
miRNA:   3'- acGACGGCUUgUGGCAGCa----GUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 40269 0.68 0.460692
Target:  5'- gUGCUGCCGcugGCCGgcaaGUCGgugcCGCUCg -3'
miRNA:   3'- -ACGACGGCuugUGGCag--CAGU----GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 39785 0.69 0.411726
Target:  5'- cGCUcgcGCCGAucguuGCGCgCGUCGUCAC-UUCg -3'
miRNA:   3'- aCGA---CGGCU-----UGUG-GCAGCAGUGcGAG- -5'
28124 5' -56.4 NC_005887.1 + 39476 0.67 0.501991
Target:  5'- cGCgagaUGCCGAACGCgGUCGcgacCACGgUUg -3'
miRNA:   3'- aCG----ACGGCUUGUGgCAGCa---GUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 38306 0.69 0.402324
Target:  5'- gGgUGCCGu-CGCCGUUGUCGaucaccgGCUCa -3'
miRNA:   3'- aCgACGGCuuGUGGCAGCAGUg------CGAG- -5'
28124 5' -56.4 NC_005887.1 + 38240 0.66 0.54483
Target:  5'- gGCcaUGCUGcACACCGcCuauuUCGCGCUCg -3'
miRNA:   3'- aCG--ACGGCuUGUGGCaGc---AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 36098 0.66 0.555733
Target:  5'- uUGCgccucGCCG-GCGCCGagGUgACGCUg -3'
miRNA:   3'- -ACGa----CGGCuUGUGGCagCAgUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 35748 0.69 0.411726
Target:  5'- cGCgaaGCCGGcCGCCGaUCG-CGCGCUg -3'
miRNA:   3'- aCGa--CGGCUuGUGGC-AGCaGUGCGAg -5'
28124 5' -56.4 NC_005887.1 + 34685 0.84 0.037174
Target:  5'- cGUUGUCGAGCagcagcgggcgGCCGUCGUCGCGCUUg -3'
miRNA:   3'- aCGACGGCUUG-----------UGGCAGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34172 0.78 0.103758
Target:  5'- -uCUGCCGAGCGCuCGgCGUCAcCGCUCa -3'
miRNA:   3'- acGACGGCUUGUG-GCaGCAGU-GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 34005 0.76 0.149992
Target:  5'- gUGCUcGCCGAGCGCCGUCGgCAgGUc- -3'
miRNA:   3'- -ACGA-CGGCUUGUGGCAGCaGUgCGag -5'
28124 5' -56.4 NC_005887.1 + 33983 0.66 0.577718
Target:  5'- aGCa-CCGG-CGCCGUa-UCACGCUCa -3'
miRNA:   3'- aCGacGGCUuGUGGCAgcAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 33875 0.69 0.381227
Target:  5'- gGCaGCCGAcaGCGCUccgucgccguauugGUCGUCGUGCUCg -3'
miRNA:   3'- aCGaCGGCU--UGUGG--------------CAGCAGUGCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.