Results 41 - 60 of 80 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28124 | 5' | -56.4 | NC_005887.1 | + | 14711 | 0.67 | 0.481126 |
Target: 5'- gGCggGCCGGGCGCgG-CGaUCGCGCa- -3' miRNA: 3'- aCGa-CGGCUUGUGgCaGC-AGUGCGag -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 28489 | 0.68 | 0.470853 |
Target: 5'- cGCgaGCaCGAGCGCCuG-CG-CGCGCUCg -3' miRNA: 3'- aCGa-CG-GCUUGUGG-CaGCaGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 40269 | 0.68 | 0.460692 |
Target: 5'- gUGCUGCCGcugGCCGgcaaGUCGgugcCGCUCg -3' miRNA: 3'- -ACGACGGCuugUGGCag--CAGU----GCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 15638 | 0.68 | 0.459682 |
Target: 5'- gGCUcGCCGAucaggGCGCCGU-GUCGCagaugcgcgccgaGCUCg -3' miRNA: 3'- aCGA-CGGCU-----UGUGGCAgCAGUG-------------CGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 23395 | 0.68 | 0.450649 |
Target: 5'- cGCUGCCGcuggcagccugcAGCAgCG-CGUCGaucaGCUCg -3' miRNA: 3'- aCGACGGC------------UUGUgGCaGCAGUg---CGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 11792 | 0.68 | 0.440727 |
Target: 5'- cGCUGCUcGGCGgCGUCGguucgUACGCUa -3' miRNA: 3'- aCGACGGcUUGUgGCAGCa----GUGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 26011 | 0.68 | 0.434833 |
Target: 5'- cGuCUGCCGGGcCACCGUCuacaaucugGugcgcgacggcaagcUCACGCUCg -3' miRNA: 3'- aC-GACGGCUU-GUGGCAG---------C---------------AGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 24066 | 0.68 | 0.43093 |
Target: 5'- gUGCgGCaggagauuccCGAGCGCCGcC-UCGCGCUCg -3' miRNA: 3'- -ACGaCG----------GCUUGUGGCaGcAGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 40563 | 0.68 | 0.421262 |
Target: 5'- --aUGCCGAACACgaCGUCGcgcCACGcCUCg -3' miRNA: 3'- acgACGGCUUGUG--GCAGCa--GUGC-GAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 39785 | 0.69 | 0.411726 |
Target: 5'- cGCUcgcGCCGAucguuGCGCgCGUCGUCAC-UUCg -3' miRNA: 3'- aCGA---CGGCU-----UGUG-GCAGCAGUGcGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 17028 | 0.69 | 0.411726 |
Target: 5'- aGCUcGCCGAcauugccgcccGCGCgGUUGaaGCGCUCa -3' miRNA: 3'- aCGA-CGGCU-----------UGUGgCAGCagUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 35748 | 0.69 | 0.411726 |
Target: 5'- cGCgaaGCCGGcCGCCGaUCG-CGCGCUg -3' miRNA: 3'- aCGa--CGGCUuGUGGC-AGCaGUGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 19573 | 0.69 | 0.402324 |
Target: 5'- gGCacGUCGAGCAgCGUCacgcuGUCGCGUUCg -3' miRNA: 3'- aCGa-CGGCUUGUgGCAG-----CAGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 40304 | 0.69 | 0.402324 |
Target: 5'- -aUUGCCGAA-GCCGUCGcucggCACGCUg -3' miRNA: 3'- acGACGGCUUgUGGCAGCa----GUGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 994 | 0.69 | 0.402324 |
Target: 5'- cGCaauUGCCGGcCGCCGUgCG-CGCGCUg -3' miRNA: 3'- aCG---ACGGCUuGUGGCA-GCaGUGCGAg -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 38306 | 0.69 | 0.402324 |
Target: 5'- gGgUGCCGu-CGCCGUUGUCGaucaccgGCUCa -3' miRNA: 3'- aCgACGGCuuGUGGCAGCAGUg------CGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 13424 | 0.69 | 0.383936 |
Target: 5'- cGCUGCUGAcgacgagcggcGCACCGcUCaG-CACGUUCa -3' miRNA: 3'- aCGACGGCU-----------UGUGGC-AG-CaGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 33875 | 0.69 | 0.381227 |
Target: 5'- gGCaGCCGAcaGCGCUccgucgccguauugGUCGUCGUGCUCg -3' miRNA: 3'- aCGaCGGCU--UGUGG--------------CAGCAGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 22114 | 0.7 | 0.366115 |
Target: 5'- cUGCUGCCGggUGCgauuggcUCGcugaUCGCGCUCg -3' miRNA: 3'- -ACGACGGCuuGUGgc-----AGC----AGUGCGAG- -5' |
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28124 | 5' | -56.4 | NC_005887.1 | + | 41300 | 0.7 | 0.340469 |
Target: 5'- cUGCUGCCgccgggcaagGAACACCG-CaUCACGgUCg -3' miRNA: 3'- -ACGACGG----------CUUGUGGCaGcAGUGCgAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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