miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28124 5' -56.4 NC_005887.1 + 28285 0.66 0.54483
Target:  5'- gGCacGCCGAGCGCgcgcagCGUCGUgGCGaCUUg -3'
miRNA:   3'- aCGa-CGGCUUGUG------GCAGCAgUGC-GAG- -5'
28124 5' -56.4 NC_005887.1 + 2956 0.66 0.54483
Target:  5'- gGCgGCCGAcguguCCGUCGUCgccuGCGCg- -3'
miRNA:   3'- aCGaCGGCUugu--GGCAGCAG----UGCGag -5'
28124 5' -56.4 NC_005887.1 + 8563 0.66 0.54483
Target:  5'- cGCaUGCCGAaggcaGCACCGcagcagguuUCGUUcgACGCUg -3'
miRNA:   3'- aCG-ACGGCU-----UGUGGC---------AGCAG--UGCGAg -5'
28124 5' -56.4 NC_005887.1 + 38240 0.66 0.54483
Target:  5'- gGCcaUGCUGcACACCGcCuauuUCGCGCUCg -3'
miRNA:   3'- aCG--ACGGCuUGUGGCaGc---AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 27105 0.66 0.54483
Target:  5'- gGCgGCagCGuGCGCgGUCG-CGCGCUCg -3'
miRNA:   3'- aCGaCG--GCuUGUGgCAGCaGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 29391 0.67 0.533998
Target:  5'- gGCccaUGCCG-GCGCgGUCGcgaUCAgGCUCg -3'
miRNA:   3'- aCG---ACGGCuUGUGgCAGC---AGUgCGAG- -5'
28124 5' -56.4 NC_005887.1 + 2253 0.67 0.523242
Target:  5'- cGCUGcCCGAuCACCGcggccggCGUCAgGC-Cg -3'
miRNA:   3'- aCGAC-GGCUuGUGGCa------GCAGUgCGaG- -5'
28124 5' -56.4 NC_005887.1 + 682 0.67 0.523242
Target:  5'- gUGCUGCUGcuCGCCGa-GUCGaugcUGCUCg -3'
miRNA:   3'- -ACGACGGCuuGUGGCagCAGU----GCGAG- -5'
28124 5' -56.4 NC_005887.1 + 29768 0.67 0.523242
Target:  5'- aGCUGaucgCGAGgauCGCCG-CGUCGCGCa- -3'
miRNA:   3'- aCGACg---GCUU---GUGGCaGCAGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 30732 0.67 0.512571
Target:  5'- cGCUGCguggccuucgCGAcuuCGCCGUCGgUCA-GCUCg -3'
miRNA:   3'- aCGACG----------GCUu--GUGGCAGC-AGUgCGAG- -5'
28124 5' -56.4 NC_005887.1 + 16252 0.67 0.512571
Target:  5'- aGC-GCaCGGGCACCGUCGcCGaGCUg -3'
miRNA:   3'- aCGaCG-GCUUGUGGCAGCaGUgCGAg -5'
28124 5' -56.4 NC_005887.1 + 39476 0.67 0.501991
Target:  5'- cGCgagaUGCCGAACGCgGUCGcgacCACGgUUg -3'
miRNA:   3'- aCG----ACGGCUUGUGgCAGCa---GUGCgAG- -5'
28124 5' -56.4 NC_005887.1 + 1353 0.67 0.501991
Target:  5'- gGCgagacGCuCGAGCGcuacauccugucCCGcgCGUCGCGCUCg -3'
miRNA:   3'- aCGa----CG-GCUUGU------------GGCa-GCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 28415 0.67 0.501991
Target:  5'- cGCaGCCGAGCGCgCGcaggCGcUCGUGCUCg -3'
miRNA:   3'- aCGaCGGCUUGUG-GCa---GC-AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 7814 0.67 0.500938
Target:  5'- -cUUGCCGAuCACC-UCGcccuuuuUCGCGCUCg -3'
miRNA:   3'- acGACGGCUuGUGGcAGC-------AGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 8467 0.67 0.491508
Target:  5'- gUGCUcgGCCcacGCGCCuugucgcuUCGUCGCGCUCu -3'
miRNA:   3'- -ACGA--CGGcu-UGUGGc-------AGCAGUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 3233 0.67 0.491508
Target:  5'- aGCUGcCCGAAC-UUGUCGagGCGCg- -3'
miRNA:   3'- aCGAC-GGCUUGuGGCAGCagUGCGag -5'
28124 5' -56.4 NC_005887.1 + 11584 0.67 0.491508
Target:  5'- gGCUucaacCCGAACACCGgaUCG--GCGCUCg -3'
miRNA:   3'- aCGAc----GGCUUGUGGC--AGCagUGCGAG- -5'
28124 5' -56.4 NC_005887.1 + 17388 0.67 0.491508
Target:  5'- cGCUGuuGAACGCgcugGUCGaUCACGUc- -3'
miRNA:   3'- aCGACggCUUGUGg---CAGC-AGUGCGag -5'
28124 5' -56.4 NC_005887.1 + 6537 0.67 0.490465
Target:  5'- cGCccccGCCGAAUucacgggGCUGUCGcCGCGCUa -3'
miRNA:   3'- aCGa---CGGCUUG-------UGGCAGCaGUGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.