miRNA display CGI


Results 41 - 60 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 31896 0.66 0.386423
Target:  5'- cGUCGGCCagccggucagGCAUgcugcugcaagaucCGgGCGUGGuuGCGCa -3'
miRNA:   3'- -CGGCUGG----------UGUA--------------GUgCGCGCCggCGCG- -5'
28125 5' -60.4 NC_005887.1 + 9956 0.66 0.383805
Target:  5'- cGCCGACCuGCAccggcuggauccuuuUCgaaccguacgAUGUGCGGC-GCGCg -3'
miRNA:   3'- -CGGCUGG-UGU---------------AG----------UGCGCGCCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 2783 0.66 0.380333
Target:  5'- cGUCaGuCCGuCGUCGCGCGgcuCGGCCGCu- -3'
miRNA:   3'- -CGG-CuGGU-GUAGUGCGC---GCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 5508 0.66 0.380333
Target:  5'- gGCaggaGugCcaGCGg-GCGCGUGGUCGCGCc -3'
miRNA:   3'- -CGg---CugG--UGUagUGCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 32894 0.66 0.380333
Target:  5'- uGCaCGGCgGcCAUCACGU-CGGCC-CGCu -3'
miRNA:   3'- -CG-GCUGgU-GUAGUGCGcGCCGGcGCG- -5'
28125 5' -60.4 NC_005887.1 + 16837 0.66 0.380333
Target:  5'- cCCGACCuuCAUCGCGU-CGaUCGCGCc -3'
miRNA:   3'- cGGCUGGu-GUAGUGCGcGCcGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 34454 0.66 0.380333
Target:  5'- gGCCgGGCC---UCGCGCcCGGCCGCc- -3'
miRNA:   3'- -CGG-CUGGuguAGUGCGcGCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 8437 0.66 0.380333
Target:  5'- cGCCGcagcgauCCGCGUCaACGCGaucgaGcGCCcgGCGCa -3'
miRNA:   3'- -CGGCu------GGUGUAG-UGCGCg----C-CGG--CGCG- -5'
28125 5' -60.4 NC_005887.1 + 10080 0.66 0.380333
Target:  5'- aGCCGcAUUcCGUCGugUGgGCGGCCcGCGCc -3'
miRNA:   3'- -CGGC-UGGuGUAGU--GCgCGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 13574 0.66 0.380333
Target:  5'- aGCaGGCCgACG--ACGCGaaggaGGCCGCGUa -3'
miRNA:   3'- -CGgCUGG-UGUagUGCGCg----CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 11310 0.66 0.377743
Target:  5'- gGCCGgcucggcagcgagcGCCGCAaC-CGCGaCGGCCGguaCGCu -3'
miRNA:   3'- -CGGC--------------UGGUGUaGuGCGC-GCCGGC---GCG- -5'
28125 5' -60.4 NC_005887.1 + 36703 0.67 0.371745
Target:  5'- cGCaGACCACG--ACGCGCaGGagaaggCGCGCg -3'
miRNA:   3'- -CGgCUGGUGUagUGCGCG-CCg-----GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 21795 0.67 0.371745
Target:  5'- cGCCGGCaucaacacgACGUcCGCgGCGCuGCCGgGCg -3'
miRNA:   3'- -CGGCUGg--------UGUA-GUG-CGCGcCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 11412 0.67 0.371745
Target:  5'- cGCCG-CCaagGCAUCGucugaGCGCcaacaGGCCGCGa -3'
miRNA:   3'- -CGGCuGG---UGUAGUg----CGCG-----CCGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 35786 0.67 0.371745
Target:  5'- -aCGACCGCGaccgagcugCACGCGUGGaucucggaaaCCGCGa -3'
miRNA:   3'- cgGCUGGUGUa--------GUGCGCGCC----------GGCGCg -5'
28125 5' -60.4 NC_005887.1 + 35956 0.67 0.371745
Target:  5'- uGCgCGACCugAaguaCGgGCGCGGCguCGCGg -3'
miRNA:   3'- -CG-GCUGGugUa---GUgCGCGCCG--GCGCg -5'
28125 5' -60.4 NC_005887.1 + 11788 0.67 0.371745
Target:  5'- uUCGugCGCGccgUGCGCGCGGCgaaGCGa -3'
miRNA:   3'- cGGCugGUGUa--GUGCGCGCCGg--CGCg -5'
28125 5' -60.4 NC_005887.1 + 16705 0.67 0.371745
Target:  5'- -aCGACaucgaACAgacgUACGUGaCGGCCgGCGCg -3'
miRNA:   3'- cgGCUGg----UGUa---GUGCGC-GCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 4747 0.67 0.371745
Target:  5'- cGCCcaucaGACCcucgcCGUCuGCGCaGCGGuCUGCGCg -3'
miRNA:   3'- -CGG-----CUGGu----GUAG-UGCG-CGCC-GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 23477 0.67 0.371745
Target:  5'- -aCGAgCugAUCgACGCGCuGCUGCGg -3'
miRNA:   3'- cgGCUgGugUAG-UGCGCGcCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.