Results 21 - 40 of 348 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28125 | 5' | -60.4 | NC_005887.1 | + | 25728 | 0.66 | 0.406879 |
Target: 5'- -aCGAUgGCGaCGCGCuGCGGCUG-GCg -3' miRNA: 3'- cgGCUGgUGUaGUGCG-CGCCGGCgCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 39545 | 0.66 | 0.406879 |
Target: 5'- aGCCuGGCCagcgGCAaCACGCGCuuuucaGGCaCGCGg -3' miRNA: 3'- -CGG-CUGG----UGUaGUGCGCG------CCG-GCGCg -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 16925 | 0.66 | 0.406879 |
Target: 5'- aGCCGuCCGCGcCGCGguacaccuCGCGGaugaugUCGCGCu -3' miRNA: 3'- -CGGCuGGUGUaGUGC--------GCGCC------GGCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 36400 | 0.66 | 0.405976 |
Target: 5'- cGUCGGCCuauaccuGgAUCGagUGCGCGgcgucgaccGCCGCGCa -3' miRNA: 3'- -CGGCUGG-------UgUAGU--GCGCGC---------CGGCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 5874 | 0.66 | 0.398794 |
Target: 5'- cGCCGACUcgauCGccgccgucuggucauUCACGUacacaccccacuucGCGGCCaGCGCc -3' miRNA: 3'- -CGGCUGGu---GU---------------AGUGCG--------------CGCCGG-CGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 18251 | 0.66 | 0.397902 |
Target: 5'- cGCCGGgCAcCGUCACGgGCGaGCUGaaaaaGUc -3' miRNA: 3'- -CGGCUgGU-GUAGUGCgCGC-CGGCg----CG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 14301 | 0.66 | 0.397902 |
Target: 5'- cGCUGAacCCGCAa---GCGCaGGCCGaCGCc -3' miRNA: 3'- -CGGCU--GGUGUagugCGCG-CCGGC-GCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 13373 | 0.66 | 0.397902 |
Target: 5'- cGgCGAUgGCGcUCGCGCugaaGGCCgGCGCg -3' miRNA: 3'- -CgGCUGgUGU-AGUGCGcg--CCGG-CGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 16203 | 0.66 | 0.397902 |
Target: 5'- cGCCGGugguUgGCggggugGUUGCGCGCGGCgcaGCGCc -3' miRNA: 3'- -CGGCU----GgUG------UAGUGCGCGCCGg--CGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 24324 | 0.66 | 0.397902 |
Target: 5'- uCCGGCgAC-UCGC-CGUGGCUGCuGCc -3' miRNA: 3'- cGGCUGgUGuAGUGcGCGCCGGCG-CG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 4568 | 0.66 | 0.397902 |
Target: 5'- aGUCGGCgaGCAgaCGCGCGauGCgCGCGCc -3' miRNA: 3'- -CGGCUGg-UGUa-GUGCGCgcCG-GCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 26201 | 0.66 | 0.397902 |
Target: 5'- cGUCGAgCGCcgCGaaacgaaGCGC-GCCGUGCa -3' miRNA: 3'- -CGGCUgGUGuaGUg------CGCGcCGGCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 3402 | 0.66 | 0.392577 |
Target: 5'- cGCCGcgcGCUACcgCugGCaggGCGGCUuugucacgcagauggGCGCg -3' miRNA: 3'- -CGGC---UGGUGuaGugCG---CGCCGG---------------CGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 23052 | 0.66 | 0.389052 |
Target: 5'- cGUCGAUCAgCGgcaACGCGCcauGCuCGCGCa -3' miRNA: 3'- -CGGCUGGU-GUag-UGCGCGc--CG-GCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 13626 | 0.66 | 0.389052 |
Target: 5'- cGUCGGCCug--CuCGgGCGGCaGCGCa -3' miRNA: 3'- -CGGCUGGuguaGuGCgCGCCGgCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 18688 | 0.66 | 0.389052 |
Target: 5'- aGCgGGCCGCcgauCGCGCuGCCGaGCa -3' miRNA: 3'- -CGgCUGGUGuaguGCGCGcCGGCgCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 1311 | 0.66 | 0.389052 |
Target: 5'- -gCGACguUuUCGCGUGCugagcGCCGCGCa -3' miRNA: 3'- cgGCUGguGuAGUGCGCGc----CGGCGCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 24952 | 0.66 | 0.389052 |
Target: 5'- aGaaGACCGag-CGCGCGgcauCGGCCGcCGCc -3' miRNA: 3'- -CggCUGGUguaGUGCGC----GCCGGC-GCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 26218 | 0.66 | 0.389052 |
Target: 5'- gGCCGGCCuGCAgCugGCGCacgGGuCCGaucCGCu -3' miRNA: 3'- -CGGCUGG-UGUaGugCGCG---CC-GGC---GCG- -5' |
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28125 | 5' | -60.4 | NC_005887.1 | + | 21575 | 0.66 | 0.389052 |
Target: 5'- aGCCGGCguCGUUGCGCcgauugcCGGCgGCGa -3' miRNA: 3'- -CGGCUGguGUAGUGCGc------GCCGgCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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