miRNA display CGI


Results 21 - 40 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 2187 0.73 0.139888
Target:  5'- cGCCGGCCGCGgugaUCGgGCagcgcaaaccgauggGCGGCUgGCGCa -3'
miRNA:   3'- -CGGCUGGUGU----AGUgCG---------------CGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 2253 0.69 0.265763
Target:  5'- cGCUGcCCG-AUCAC-CGCGGCCgGCGUc -3'
miRNA:   3'- -CGGCuGGUgUAGUGcGCGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 2783 0.66 0.380333
Target:  5'- cGUCaGuCCGuCGUCGCGCGgcuCGGCCGCu- -3'
miRNA:   3'- -CGG-CuGGU-GUAGUGCGC---GCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 2905 0.66 0.415983
Target:  5'- cGUCGGCCGCcgCgaACGaCGCcGCCGCcaaGCu -3'
miRNA:   3'- -CGGCUGGUGuaG--UGC-GCGcCGGCG---CG- -5'
28125 5' -60.4 NC_005887.1 + 2975 0.71 0.190548
Target:  5'- uGgCGGCgGCGUCGuuCGCgGCGGCCGaCGUg -3'
miRNA:   3'- -CgGCUGgUGUAGU--GCG-CGCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 2998 0.67 0.363291
Target:  5'- uUCGuCCGuCAaCGCGCcuGCGGCCaGCGCc -3'
miRNA:   3'- cGGCuGGU-GUaGUGCG--CGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 3090 0.69 0.252156
Target:  5'- cGCCGACCACGgccgCAUGaaggaaaaGCggcagucguacgaGGCCGUGUg -3'
miRNA:   3'- -CGGCUGGUGUa---GUGCg-------CG-------------CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 3092 0.66 0.415983
Target:  5'- gGCCGAgCAUGgcuuugccCGCgGCGCuGGCCGCagGCg -3'
miRNA:   3'- -CGGCUgGUGUa-------GUG-CGCG-CCGGCG--CG- -5'
28125 5' -60.4 NC_005887.1 + 3243 0.7 0.234315
Target:  5'- uUCGACCGCGcCGCuCGC-GCUGCGCa -3'
miRNA:   3'- cGGCUGGUGUaGUGcGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 3402 0.66 0.392577
Target:  5'- cGCCGcgcGCUACcgCugGCaggGCGGCUuugucacgcagauggGCGCg -3'
miRNA:   3'- -CGGC---UGGUGuaGugCG---CGCCGG---------------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 3472 0.71 0.206052
Target:  5'- aGCCGcccuGCCAgCGguaGCGCGCGGCgaacagcgUGCGCa -3'
miRNA:   3'- -CGGC----UGGU-GUag-UGCGCGCCG--------GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 3613 0.7 0.240344
Target:  5'- cGCCaGGCCGCGcaGCGCuuCGGCCGUGa -3'
miRNA:   3'- -CGG-CUGGUGUagUGCGc-GCCGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 3680 0.73 0.131076
Target:  5'- -aCGGCCGaagCGCuGCGCGGCCugGCGCa -3'
miRNA:   3'- cgGCUGGUguaGUG-CGCGCCGG--CGCG- -5'
28125 5' -60.4 NC_005887.1 + 3723 0.77 0.065497
Target:  5'- cGCCGACCGCgAUC-CGCGCaagcuggacGGCCGCa- -3'
miRNA:   3'- -CGGCUGGUG-UAGuGCGCG---------CCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 3781 0.72 0.158308
Target:  5'- cGCgGAUCGCgGUCgGCGCGCGGCUcgacgGCGUg -3'
miRNA:   3'- -CGgCUGGUG-UAG-UGCGCGCCGG-----CGCG- -5'
28125 5' -60.4 NC_005887.1 + 3790 0.67 0.338736
Target:  5'- gGCCgcGACCGCAUCGUGCagaacaGCGGCUuuCGCa -3'
miRNA:   3'- -CGG--CUGGUGUAGUGCG------CGCCGGc-GCG- -5'
28125 5' -60.4 NC_005887.1 + 4323 0.74 0.120782
Target:  5'- gGCCGAgCAguUCagacuGCGUGCGGCCGaGCg -3'
miRNA:   3'- -CGGCUgGUguAG-----UGCGCGCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 4489 0.71 0.202867
Target:  5'- uGCCGAacggcgcgCGCAUCGCGCGUcugcucgccgacuacGGCgGCGUc -3'
miRNA:   3'- -CGGCUg-------GUGUAGUGCGCG---------------CCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 4496 0.67 0.350043
Target:  5'- uGCCGGCUGCugcaaccauugcaggAUCGcCGCGCcuucGCCgGCGCg -3'
miRNA:   3'- -CGGCUGGUG---------------UAGU-GCGCGc---CGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 4568 0.66 0.397902
Target:  5'- aGUCGGCgaGCAgaCGCGCGauGCgCGCGCc -3'
miRNA:   3'- -CGGCUGg-UGUa-GUGCGCgcCG-GCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.