miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 353 0.69 0.272449
Target:  5'- cGCUGAUCACGcCACGCaGUucCCGCGCc -3'
miRNA:   3'- -CGGCUGGUGUaGUGCG-CGccGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 414 0.72 0.154125
Target:  5'- aGCUcACCGCGcaCAUGCGaCGGCuCGCGCa -3'
miRNA:   3'- -CGGcUGGUGUa-GUGCGC-GCCG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 522 0.72 0.158308
Target:  5'- gGUCGAUCugA--ACGCGuCGGCCGcCGCg -3'
miRNA:   3'- -CGGCUGGugUagUGCGC-GCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 602 0.73 0.134684
Target:  5'- uCCGG-CGCggCGCGCgGCGGCCGaCGCg -3'
miRNA:   3'- cGGCUgGUGuaGUGCG-CGCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 618 0.7 0.228413
Target:  5'- uGCUGcaaagaucgaaGCCGCGaugaaaGCGCGCGGCgaGCGCa -3'
miRNA:   3'- -CGGC-----------UGGUGUag----UGCGCGCCGg-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 720 0.74 0.127558
Target:  5'- gGUCGGCgGuCAUgCGCGUGCGcucGCCGCGCg -3'
miRNA:   3'- -CGGCUGgU-GUA-GUGCGCGC---CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 808 0.71 0.199204
Target:  5'- -gCGAUCGCGaucaacagccaugcUCGCGCgaucGCGGCCGCGa -3'
miRNA:   3'- cgGCUGGUGU--------------AGUGCG----CGCCGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 855 0.67 0.338736
Target:  5'- aGCCaagguGCC-CGUgGaCGCGUGGCCcGCGCc -3'
miRNA:   3'- -CGGc----UGGuGUAgU-GCGCGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 889 0.67 0.35497
Target:  5'- -gCGGCCGCgAUCGCGCGagcauGGCUGUugaucGCg -3'
miRNA:   3'- cgGCUGGUG-UAGUGCGCg----CCGGCG-----CG- -5'
28125 5' -60.4 NC_005887.1 + 1000 0.72 0.154125
Target:  5'- uGCCGGCCGCcgUGCGCGC-GCUGUa- -3'
miRNA:   3'- -CGGCUGGUGuaGUGCGCGcCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 1074 0.71 0.190548
Target:  5'- aGCCgGugUACAgcgCGCGCacgGCGGCCG-GCa -3'
miRNA:   3'- -CGG-CugGUGUa--GUGCG---CGCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 1215 0.69 0.279269
Target:  5'- uCgGAUCACcuuAUCugGCGgGcGCUGCGCg -3'
miRNA:   3'- cGgCUGGUG---UAGugCGCgC-CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 1218 0.69 0.275161
Target:  5'- uCCGGCCcgucagauccuucacGCG-CACGCGCGGCUuCGUc -3'
miRNA:   3'- cGGCUGG---------------UGUaGUGCGCGCCGGcGCG- -5'
28125 5' -60.4 NC_005887.1 + 1311 0.66 0.389052
Target:  5'- -gCGACguUuUCGCGUGCugagcGCCGCGCa -3'
miRNA:   3'- cgGCUGguGuAGUGCGCGc----CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 1481 0.84 0.022102
Target:  5'- cGCCGACgGCGUgcggcgcucgCGCgGCGCGGCCGUGCg -3'
miRNA:   3'- -CGGCUGgUGUA----------GUG-CGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 1560 0.7 0.211459
Target:  5'- cGCaCGGCCGCGcCGCGCGaGcGCCGCa- -3'
miRNA:   3'- -CG-GCUGGUGUaGUGCGCgC-CGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 1765 0.68 0.300543
Target:  5'- aGCCGAUCcucgACAUgcucgaccUGCGCGuCGGCCGCu- -3'
miRNA:   3'- -CGGCUGG----UGUA--------GUGCGC-GCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 1877 0.7 0.222637
Target:  5'- uGCCGuACCAgGUCggcggcACGUccuucggguaGCGGCCGaCGCg -3'
miRNA:   3'- -CGGC-UGGUgUAG------UGCG----------CGCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 1927 0.68 0.307907
Target:  5'- aGCCgGGCgGCGUCAUGCGUGaCgGCGa -3'
miRNA:   3'- -CGG-CUGgUGUAGUGCGCGCcGgCGCg -5'
28125 5' -60.4 NC_005887.1 + 1999 0.69 0.246502
Target:  5'- gGCCGGCUACuacgaGCGCGGCaugcaGgGCa -3'
miRNA:   3'- -CGGCUGGUGuagugCGCGCCGg----CgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.