miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 10012 1.13 0.000139
Target:  5'- cGCCGACCACAUCACGCGCGGCCGCGCu -3'
miRNA:   3'- -CGGCUGGUGUAGUGCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24956 0.86 0.013914
Target:  5'- cGCgGGCCGCcUUGCGCGCGGCCGCGa -3'
miRNA:   3'- -CGgCUGGUGuAGUGCGCGCCGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 1481 0.84 0.022102
Target:  5'- cGCCGACgGCGUgcggcgcucgCGCgGCGCGGCCGUGCg -3'
miRNA:   3'- -CGGCUGgUGUA----------GUG-CGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24523 0.83 0.024804
Target:  5'- cUCGACgguaaGCAUCACGCGCGGCCGCa- -3'
miRNA:   3'- cGGCUGg----UGUAGUGCGCGCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 32826 0.82 0.027831
Target:  5'- aGCCGGCUGCAUgGCGCGCG-CCgGCGCg -3'
miRNA:   3'- -CGGCUGGUGUAgUGCGCGCcGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 13326 0.82 0.028644
Target:  5'- cGCCGGCCGCAUCGCG-GaucucGCCGCGCa -3'
miRNA:   3'- -CGGCUGGUGUAGUGCgCgc---CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 33754 0.82 0.03204
Target:  5'- cGCCGGCCuucacgaGCAUCugGCGCGG-CGUGCc -3'
miRNA:   3'- -CGGCUGG-------UGUAGugCGCGCCgGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 22872 0.81 0.033068
Target:  5'- cGCCGGCCGCuaucagauccUCGCGCGCuGGUgGCGCa -3'
miRNA:   3'- -CGGCUGGUGu---------AGUGCGCG-CCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 32486 0.81 0.038162
Target:  5'- cGCCGGCCACAUCGcCGC-CGGCCaCGUc -3'
miRNA:   3'- -CGGCUGGUGUAGU-GCGcGCCGGcGCG- -5'
28125 5' -60.4 NC_005887.1 + 17817 0.8 0.042785
Target:  5'- aCCGGgCGcCAUCAgcCGCGCGGCCGUGCc -3'
miRNA:   3'- cGGCUgGU-GUAGU--GCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 27329 0.8 0.045297
Target:  5'- uCCGGCCACGUCgacugcgccACGCGCaGCgGCGCg -3'
miRNA:   3'- cGGCUGGUGUAG---------UGCGCGcCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 26685 0.79 0.046606
Target:  5'- uGCCGuuCCAUGUCGCgauacagccgucGCGCGGCCGCGg -3'
miRNA:   3'- -CGGCu-GGUGUAGUG------------CGCGCCGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 35395 0.79 0.047953
Target:  5'- gGCCGGCCGCcgCgGCGCGCGGCaguggaGCGa -3'
miRNA:   3'- -CGGCUGGUGuaG-UGCGCGCCGg-----CGCg -5'
28125 5' -60.4 NC_005887.1 + 11455 0.79 0.05076
Target:  5'- cGCCGGCCGCca-GCGCucCGGCUGCGCu -3'
miRNA:   3'- -CGGCUGGUGuagUGCGc-GCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24604 0.78 0.063674
Target:  5'- cCCGGCCGa---AgGUGCGGCCGCGCg -3'
miRNA:   3'- cGGCUGGUguagUgCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 35743 0.77 0.065497
Target:  5'- aGCCGGCCGCcgAUCGCGCGCuGCUGUa- -3'
miRNA:   3'- -CGGCUGGUG--UAGUGCGCGcCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 3723 0.77 0.065497
Target:  5'- cGCCGACCGCgAUC-CGCGCaagcuggacGGCCGCa- -3'
miRNA:   3'- -CGGCUGGUG-UAGuGCGCG---------CCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 38297 0.77 0.067369
Target:  5'- cGCuCGACCAUcccggcCACGCGCaaGGCUGCGCg -3'
miRNA:   3'- -CG-GCUGGUGua----GUGCGCG--CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 27422 0.77 0.067369
Target:  5'- uGCCGACgCuCGUCuGCGCGCcGCUGCGCg -3'
miRNA:   3'- -CGGCUG-GuGUAG-UGCGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 25037 0.77 0.07127
Target:  5'- cCCGACC-UGUCcCuCGCGGCCGCGCg -3'
miRNA:   3'- cGGCUGGuGUAGuGcGCGCCGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.