miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 11310 0.66 0.377743
Target:  5'- gGCCGgcucggcagcgagcGCCGCAaC-CGCGaCGGCCGguaCGCu -3'
miRNA:   3'- -CGGC--------------UGGUGUaGuGCGC-GCCGGC---GCG- -5'
28125 5' -60.4 NC_005887.1 + 31896 0.66 0.386423
Target:  5'- cGUCGGCCagccggucagGCAUgcugcugcaagaucCGgGCGUGGuuGCGCa -3'
miRNA:   3'- -CGGCUGG----------UGUA--------------GUgCGCGCCggCGCG- -5'
28125 5' -60.4 NC_005887.1 + 26218 0.66 0.389052
Target:  5'- gGCCGGCCuGCAgCugGCGCacgGGuCCGaucCGCu -3'
miRNA:   3'- -CGGCUGG-UGUaGugCGCG---CC-GGC---GCG- -5'
28125 5' -60.4 NC_005887.1 + 21299 0.66 0.406879
Target:  5'- cGUCGcCCACAuUCACGgGCacgcccaCCGCGCc -3'
miRNA:   3'- -CGGCuGGUGU-AGUGCgCGcc-----GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 14301 0.66 0.397902
Target:  5'- cGCUGAacCCGCAa---GCGCaGGCCGaCGCc -3'
miRNA:   3'- -CGGCU--GGUGUagugCGCG-CCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 24187 0.66 0.406879
Target:  5'- aGCCGcCCACAgCGuCGUGuuGCCGaCGUg -3'
miRNA:   3'- -CGGCuGGUGUaGU-GCGCgcCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 30985 0.66 0.415983
Target:  5'- cGCCcACUguucgggguGCGUCucuCGCGUGGCgCgGCGCa -3'
miRNA:   3'- -CGGcUGG---------UGUAGu--GCGCGCCG-G-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 36967 0.66 0.415983
Target:  5'- cGUCGucuCgGCGUCGCGCG-GGUCGaGCu -3'
miRNA:   3'- -CGGCu--GgUGUAGUGCGCgCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 8437 0.66 0.380333
Target:  5'- cGCCGcagcgauCCGCGUCaACGCGaucgaGcGCCcgGCGCa -3'
miRNA:   3'- -CGGCu------GGUGUAG-UGCGCg----C-CGG--CGCG- -5'
28125 5' -60.4 NC_005887.1 + 18251 0.66 0.397902
Target:  5'- cGCCGGgCAcCGUCACGgGCGaGCUGaaaaaGUc -3'
miRNA:   3'- -CGGCUgGU-GUAGUGCgCGC-CGGCg----CG- -5'
28125 5' -60.4 NC_005887.1 + 13373 0.66 0.397902
Target:  5'- cGgCGAUgGCGcUCGCGCugaaGGCCgGCGCg -3'
miRNA:   3'- -CgGCUGgUGU-AGUGCGcg--CCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 3402 0.66 0.392577
Target:  5'- cGCCGcgcGCUACcgCugGCaggGCGGCUuugucacgcagauggGCGCg -3'
miRNA:   3'- -CGGC---UGGUGuaGugCG---CGCCGG---------------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 2905 0.66 0.415983
Target:  5'- cGUCGGCCGCcgCgaACGaCGCcGCCGCcaaGCu -3'
miRNA:   3'- -CGGCUGGUGuaG--UGC-GCGcCGGCG---CG- -5'
28125 5' -60.4 NC_005887.1 + 24619 0.66 0.415983
Target:  5'- -gCGGCCGC---ACGCGUGGUCGaacaGCu -3'
miRNA:   3'- cgGCUGGUGuagUGCGCGCCGGCg---CG- -5'
28125 5' -60.4 NC_005887.1 + 13730 0.66 0.415983
Target:  5'- aGCCGA--ACAUCGuCGCGaugccguaCGGCUgGCGCg -3'
miRNA:   3'- -CGGCUggUGUAGU-GCGC--------GCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 5826 0.66 0.406879
Target:  5'- aGUCGGCgCGgGUCGCGaagggcgaaGCGGagcucaCCGCGCu -3'
miRNA:   3'- -CGGCUG-GUgUAGUGCg--------CGCC------GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 13574 0.66 0.380333
Target:  5'- aGCaGGCCgACG--ACGCGaaggaGGCCGCGUa -3'
miRNA:   3'- -CGgCUGG-UGUagUGCGCg----CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 14427 0.66 0.415983
Target:  5'- aGCCgGACC-CGaCGCGCGCaaCCGCGa -3'
miRNA:   3'- -CGG-CUGGuGUaGUGCGCGccGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 34634 0.66 0.406879
Target:  5'- cGCCGuuCGCGUCgACGagGCGcGCCG-GCu -3'
miRNA:   3'- -CGGCugGUGUAG-UGCg-CGC-CGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 10080 0.66 0.380333
Target:  5'- aGCCGcAUUcCGUCGugUGgGCGGCCcGCGCc -3'
miRNA:   3'- -CGGC-UGGuGUAGU--GCgCGCCGG-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.