miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 7426 0.74 0.114343
Target:  5'- cGCCGccGCCuCGUUugGCGCuGGCgUGCGCg -3'
miRNA:   3'- -CGGC--UGGuGUAGugCGCG-CCG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 40753 0.76 0.086703
Target:  5'- aGgCGAUCGCcgUugGCGC-GCCGCGCg -3'
miRNA:   3'- -CgGCUGGUGuaGugCGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 14952 0.75 0.091667
Target:  5'- uGCCGuacgacgcGCCGCAcUCGacgccuacgcCGCGCaGGCCGCGCa -3'
miRNA:   3'- -CGGC--------UGGUGU-AGU----------GCGCG-CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 35346 0.75 0.094249
Target:  5'- gGCCGGCCACGagcuUCACGCcCGGCaccaCGCGg -3'
miRNA:   3'- -CGGCUGGUGU----AGUGCGcGCCG----GCGCg -5'
28125 5' -60.4 NC_005887.1 + 27245 0.75 0.102415
Target:  5'- cGCa-ACUGCAUCGCGCGcCGGCcCGCGUc -3'
miRNA:   3'- -CGgcUGGUGUAGUGCGC-GCCG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 15915 0.75 0.102415
Target:  5'- gGCCGACCuGCGUUcCGCGCGGgCCggaaucgauGCGCc -3'
miRNA:   3'- -CGGCUGG-UGUAGuGCGCGCC-GG---------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 26421 0.75 0.102415
Target:  5'- uGgCGGCCGCGcgggaACGCGCGcugcaGCCGCGCg -3'
miRNA:   3'- -CgGCUGGUGUag---UGCGCGC-----CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 23230 0.75 0.105283
Target:  5'- cGCCGACgGCA-CGCGaGCGGCgGCGg -3'
miRNA:   3'- -CGGCUGgUGUaGUGCgCGCCGgCGCg -5'
28125 5' -60.4 NC_005887.1 + 31498 0.74 0.114343
Target:  5'- aCCGAUUGCcgCGCGCGCGG-CGCGg -3'
miRNA:   3'- cGGCUGGUGuaGUGCGCGCCgGCGCg -5'
28125 5' -60.4 NC_005887.1 + 34350 0.76 0.08598
Target:  5'- cGCCGGCCACGgcuggagacgagCGCcccgcguaucagaGUGCGGCCGgGCg -3'
miRNA:   3'- -CGGCUGGUGUa-----------GUG-------------CGCGCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 40337 0.76 0.084317
Target:  5'- cGCCG-CCGaaauggacuggcCGUCGaGCGCGGCCGUGCc -3'
miRNA:   3'- -CGGCuGGU------------GUAGUgCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 3723 0.77 0.065497
Target:  5'- cGCCGACCGCgAUC-CGCGCaagcuggacGGCCGCa- -3'
miRNA:   3'- -CGGCUGGUG-UAGuGCGCG---------CCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 24956 0.86 0.013914
Target:  5'- cGCgGGCCGCcUUGCGCGCGGCCGCGa -3'
miRNA:   3'- -CGgCUGGUGuAGUGCGCGCCGGCGCg -5'
28125 5' -60.4 NC_005887.1 + 1481 0.84 0.022102
Target:  5'- cGCCGACgGCGUgcggcgcucgCGCgGCGCGGCCGUGCg -3'
miRNA:   3'- -CGGCUGgUGUA----------GUG-CGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24523 0.83 0.024804
Target:  5'- cUCGACgguaaGCAUCACGCGCGGCCGCa- -3'
miRNA:   3'- cGGCUGg----UGUAGUGCGCGCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 13326 0.82 0.028644
Target:  5'- cGCCGGCCGCAUCGCG-GaucucGCCGCGCa -3'
miRNA:   3'- -CGGCUGGUGUAGUGCgCgc---CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 33754 0.82 0.03204
Target:  5'- cGCCGGCCuucacgaGCAUCugGCGCGG-CGUGCc -3'
miRNA:   3'- -CGGCUGG-------UGUAGugCGCGCCgGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 22872 0.81 0.033068
Target:  5'- cGCCGGCCGCuaucagauccUCGCGCGCuGGUgGCGCa -3'
miRNA:   3'- -CGGCUGGUGu---------AGUGCGCG-CCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 27329 0.8 0.045297
Target:  5'- uCCGGCCACGUCgacugcgccACGCGCaGCgGCGCg -3'
miRNA:   3'- cGGCUGGUGUAG---------UGCGCGcCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 26685 0.79 0.046606
Target:  5'- uGCCGuuCCAUGUCGCgauacagccgucGCGCGGCCGCGg -3'
miRNA:   3'- -CGGCu-GGUGUAGUG------------CGCGCCGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.