miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 5465 0.66 0.42521
Target:  5'- cGCCGcCCGCcgguUCAC---CGGUCGCGCu -3'
miRNA:   3'- -CGGCuGGUGu---AGUGcgcGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24952 0.66 0.389052
Target:  5'- aGaaGACCGag-CGCGCGgcauCGGCCGcCGCc -3'
miRNA:   3'- -CggCUGGUguaGUGCGC----GCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 18688 0.66 0.389052
Target:  5'- aGCgGGCCGCcgauCGCGCuGCCGaGCa -3'
miRNA:   3'- -CGgCUGGUGuaguGCGCGcCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 32826 0.82 0.027831
Target:  5'- aGCCGGCUGCAUgGCGCGCG-CCgGCGCg -3'
miRNA:   3'- -CGGCUGGUGUAgUGCGCGCcGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 30809 0.66 0.415983
Target:  5'- aGCUGACCGacggcgaaGUCGCGaa-GGCCaCGCa -3'
miRNA:   3'- -CGGCUGGUg-------UAGUGCgcgCCGGcGCG- -5'
28125 5' -60.4 NC_005887.1 + 25728 0.66 0.406879
Target:  5'- -aCGAUgGCGaCGCGCuGCGGCUG-GCg -3'
miRNA:   3'- cgGCUGgUGUaGUGCG-CGCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 16925 0.66 0.406879
Target:  5'- aGCCGuCCGCGcCGCGguacaccuCGCGGaugaugUCGCGCu -3'
miRNA:   3'- -CGGCuGGUGUaGUGC--------GCGCC------GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 39545 0.66 0.406879
Target:  5'- aGCCuGGCCagcgGCAaCACGCGCuuuucaGGCaCGCGg -3'
miRNA:   3'- -CGG-CUGG----UGUaGUGCGCG------CCG-GCGCg -5'
28125 5' -60.4 NC_005887.1 + 16203 0.66 0.397902
Target:  5'- cGCCGGugguUgGCggggugGUUGCGCGCGGCgcaGCGCc -3'
miRNA:   3'- -CGGCU----GgUG------UAGUGCGCGCCGg--CGCG- -5'
28125 5' -60.4 NC_005887.1 + 13626 0.66 0.389052
Target:  5'- cGUCGGCCug--CuCGgGCGGCaGCGCa -3'
miRNA:   3'- -CGGCUGGuguaGuGCgCGCCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 26201 0.66 0.397902
Target:  5'- cGUCGAgCGCcgCGaaacgaaGCGC-GCCGUGCa -3'
miRNA:   3'- -CGGCUgGUGuaGUg------CGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 5874 0.66 0.398794
Target:  5'- cGCCGACUcgauCGccgccgucuggucauUCACGUacacaccccacuucGCGGCCaGCGCc -3'
miRNA:   3'- -CGGCUGGu---GU---------------AGUGCG--------------CGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 31287 0.66 0.42521
Target:  5'- uUCGAUCGCGUCGUGCugaagcacGCGGCgcccgaaaucuaCGCGCg -3'
miRNA:   3'- cGGCUGGUGUAGUGCG--------CGCCG------------GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 4568 0.66 0.397902
Target:  5'- aGUCGGCgaGCAgaCGCGCGauGCgCGCGCc -3'
miRNA:   3'- -CGGCUGg-UGUa-GUGCGCgcCG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 3092 0.66 0.415983
Target:  5'- gGCCGAgCAUGgcuuugccCGCgGCGCuGGCCGCagGCg -3'
miRNA:   3'- -CGGCUgGUGUa-------GUG-CGCG-CCGGCG--CG- -5'
28125 5' -60.4 NC_005887.1 + 36400 0.66 0.405976
Target:  5'- cGUCGGCCuauaccuGgAUCGagUGCGCGgcgucgaccGCCGCGCa -3'
miRNA:   3'- -CGGCUGG-------UgUAGU--GCGCGC---------CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 23052 0.66 0.389052
Target:  5'- cGUCGAUCAgCGgcaACGCGCcauGCuCGCGCa -3'
miRNA:   3'- -CGGCUGGU-GUag-UGCGCGc--CG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 1311 0.66 0.389052
Target:  5'- -gCGACguUuUCGCGUGCugagcGCCGCGCa -3'
miRNA:   3'- cgGCUGguGuAGUGCGCGc----CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 21390 0.66 0.415983
Target:  5'- aCCGGCCGaugcgGUCG-GCGCGGUgggCGUGCc -3'
miRNA:   3'- cGGCUGGUg----UAGUgCGCGCCG---GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 14087 0.66 0.406879
Target:  5'- cGCCGGCgGC---GCGCcgGCGGuuGCGg -3'
miRNA:   3'- -CGGCUGgUGuagUGCG--CGCCggCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.