miRNA display CGI


Results 21 - 40 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 14087 0.66 0.406879
Target:  5'- cGCCGGCgGC---GCGCcgGCGGuuGCGg -3'
miRNA:   3'- -CGGCUGgUGuagUGCG--CGCCggCGCg -5'
28125 5' -60.4 NC_005887.1 + 13730 0.66 0.415983
Target:  5'- aGCCGA--ACAUCGuCGCGaugccguaCGGCUgGCGCg -3'
miRNA:   3'- -CGGCUggUGUAGU-GCGC--------GCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 16406 0.66 0.42521
Target:  5'- cGCCGGCCGgAagcUCACGCa-GGCCGa-- -3'
miRNA:   3'- -CGGCUGGUgU---AGUGCGcgCCGGCgcg -5'
28125 5' -60.4 NC_005887.1 + 26201 0.66 0.397902
Target:  5'- cGUCGAgCGCcgCGaaacgaaGCGC-GCCGUGCa -3'
miRNA:   3'- -CGGCUgGUGuaGUg------CGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 16203 0.66 0.397902
Target:  5'- cGCCGGugguUgGCggggugGUUGCGCGCGGCgcaGCGCc -3'
miRNA:   3'- -CGGCU----GgUG------UAGUGCGCGCCGg--CGCG- -5'
28125 5' -60.4 NC_005887.1 + 23052 0.66 0.389052
Target:  5'- cGUCGAUCAgCGgcaACGCGCcauGCuCGCGCa -3'
miRNA:   3'- -CGGCUGGU-GUag-UGCGCGc--CG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 5826 0.66 0.406879
Target:  5'- aGUCGGCgCGgGUCGCGaagggcgaaGCGGagcucaCCGCGCu -3'
miRNA:   3'- -CGGCUG-GUgUAGUGCg--------CGCC------GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 25728 0.66 0.406879
Target:  5'- -aCGAUgGCGaCGCGCuGCGGCUG-GCg -3'
miRNA:   3'- cgGCUGgUGUaGUGCG-CGCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 26494 0.66 0.421504
Target:  5'- uGCCGGCCGCuuccUCGacgauuuccucgaGCGCcugcaguuucaGGUCGUGCa -3'
miRNA:   3'- -CGGCUGGUGu---AGUg------------CGCG-----------CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 30985 0.66 0.415983
Target:  5'- cGCCcACUguucgggguGCGUCucuCGCGUGGCgCgGCGCa -3'
miRNA:   3'- -CGGcUGG---------UGUAGu--GCGCGCCG-G-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 18985 0.66 0.42521
Target:  5'- -gCGGCaGCAUgGCGCaGUcuaaccaaaGGCCGCGCc -3'
miRNA:   3'- cgGCUGgUGUAgUGCG-CG---------CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 5465 0.66 0.42521
Target:  5'- cGCCGcCCGCcgguUCAC---CGGUCGCGCu -3'
miRNA:   3'- -CGGCuGGUGu---AGUGcgcGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 14301 0.66 0.397902
Target:  5'- cGCUGAacCCGCAa---GCGCaGGCCGaCGCc -3'
miRNA:   3'- -CGGCU--GGUGUagugCGCG-CCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 11310 0.66 0.377743
Target:  5'- gGCCGgcucggcagcgagcGCCGCAaC-CGCGaCGGCCGguaCGCu -3'
miRNA:   3'- -CGGC--------------UGGUGUaGuGCGC-GCCGGC---GCG- -5'
28125 5' -60.4 NC_005887.1 + 39545 0.66 0.406879
Target:  5'- aGCCuGGCCagcgGCAaCACGCGCuuuucaGGCaCGCGg -3'
miRNA:   3'- -CGG-CUGG----UGUaGUGCGCG------CCG-GCGCg -5'
28125 5' -60.4 NC_005887.1 + 24324 0.66 0.397902
Target:  5'- uCCGGCgAC-UCGC-CGUGGCUGCuGCc -3'
miRNA:   3'- cGGCUGgUGuAGUGcGCGCCGGCG-CG- -5'
28125 5' -60.4 NC_005887.1 + 31896 0.66 0.386423
Target:  5'- cGUCGGCCagccggucagGCAUgcugcugcaagaucCGgGCGUGGuuGCGCa -3'
miRNA:   3'- -CGGCUGG----------UGUA--------------GUgCGCGCCggCGCG- -5'
28125 5' -60.4 NC_005887.1 + 3402 0.66 0.392577
Target:  5'- cGCCGcgcGCUACcgCugGCaggGCGGCUuugucacgcagauggGCGCg -3'
miRNA:   3'- -CGGC---UGGUGuaGugCG---CGCCGG---------------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 36400 0.66 0.405976
Target:  5'- cGUCGGCCuauaccuGgAUCGagUGCGCGgcgucgaccGCCGCGCa -3'
miRNA:   3'- -CGGCUGG-------UgUAGU--GCGCGC---------CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 31272 0.66 0.426139
Target:  5'- cGUCGGCCGCGUCGauCGCcucgucgagcucgacCGGCaucgGCGCa -3'
miRNA:   3'- -CGGCUGGUGUAGU--GCGc--------------GCCGg---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.