miRNA display CGI


Results 21 - 40 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 28643 0.77 0.073302
Target:  5'- cGUCGACCGCGUC-CGCGCagcgGGCgGCGa -3'
miRNA:   3'- -CGGCUGGUGUAGuGCGCG----CCGgCGCg -5'
28125 5' -60.4 NC_005887.1 + 40600 0.77 0.073302
Target:  5'- cGCCaGACCGuCGUCGCuGcCGCGcGCCGCGUg -3'
miRNA:   3'- -CGG-CUGGU-GUAGUG-C-GCGC-CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 17264 0.76 0.079733
Target:  5'- uGCgCGGCgcaACAUugcCGCGUGCGGCCGCGUu -3'
miRNA:   3'- -CG-GCUGg--UGUA---GUGCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 13599 0.76 0.079733
Target:  5'- cGCCGAUCGCAuUCGCGauCGUGGC-GCGCa -3'
miRNA:   3'- -CGGCUGGUGU-AGUGC--GCGCCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 10976 0.76 0.084317
Target:  5'- gGCCGGCCgACGUCAucUGCGcCGGCUGCa- -3'
miRNA:   3'- -CGGCUGG-UGUAGU--GCGC-GCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 40337 0.76 0.084317
Target:  5'- cGCCG-CCGaaauggacuggcCGUCGaGCGCGGCCGUGCc -3'
miRNA:   3'- -CGGCuGGU------------GUAGUgCGCGCCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 34350 0.76 0.08598
Target:  5'- cGCCGGCCACGgcuggagacgagCGCcccgcguaucagaGUGCGGCCGgGCg -3'
miRNA:   3'- -CGGCUGGUGUa-----------GUG-------------CGCGCCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 40753 0.76 0.086703
Target:  5'- aGgCGAUCGCcgUugGCGC-GCCGCGCg -3'
miRNA:   3'- -CgGCUGGUGuaGugCGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 18025 0.76 0.088904
Target:  5'- uGCCGGCgagcccgCGCAUCAUGUGCGacugaaacGCCGUGCg -3'
miRNA:   3'- -CGGCUG-------GUGUAGUGCGCGC--------CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 24680 0.76 0.089152
Target:  5'- uUCGACCAC---GCGUGCGGCCGCa- -3'
miRNA:   3'- cGGCUGGUGuagUGCGCGCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 14952 0.75 0.091667
Target:  5'- uGCCGuacgacgcGCCGCAcUCGacgccuacgcCGCGCaGGCCGCGCa -3'
miRNA:   3'- -CGGC--------UGGUGU-AGU----------GCGCG-CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 40451 0.75 0.091667
Target:  5'- uGCCGGgcaUCACGauuuccUCGCGCGCgacggcggcacGGCCGCGCu -3'
miRNA:   3'- -CGGCU---GGUGU------AGUGCGCG-----------CCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 16791 0.75 0.094249
Target:  5'- uCCGACUugAUCGCGC-CGGCCGUc- -3'
miRNA:   3'- cGGCUGGugUAGUGCGcGCCGGCGcg -5'
28125 5' -60.4 NC_005887.1 + 35346 0.75 0.094249
Target:  5'- gGCCGGCCACGagcuUCACGCcCGGCaccaCGCGg -3'
miRNA:   3'- -CGGCUGGUGU----AGUGCGcGCCG----GCGCg -5'
28125 5' -60.4 NC_005887.1 + 40834 0.75 0.099622
Target:  5'- cGCCGGCUcgGCG--GCGCGCGGC-GCGCc -3'
miRNA:   3'- -CGGCUGG--UGUagUGCGCGCCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 26421 0.75 0.102415
Target:  5'- uGgCGGCCGCGcgggaACGCGCGcugcaGCCGCGCg -3'
miRNA:   3'- -CgGCUGGUGUag---UGCGCGC-----CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 15915 0.75 0.102415
Target:  5'- gGCCGACCuGCGUUcCGCGCGGgCCggaaucgauGCGCc -3'
miRNA:   3'- -CGGCUGG-UGUAGuGCGCGCC-GG---------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 27245 0.75 0.102415
Target:  5'- cGCa-ACUGCAUCGCGCGcCGGCcCGCGUc -3'
miRNA:   3'- -CGgcUGGUGUAGUGCGC-GCCG-GCGCG- -5'
28125 5' -60.4 NC_005887.1 + 23230 0.75 0.105283
Target:  5'- cGCCGACgGCA-CGCGaGCGGCgGCGg -3'
miRNA:   3'- -CGGCUGgUGUaGUGCgCGCCGgCGCg -5'
28125 5' -60.4 NC_005887.1 + 26521 0.74 0.111245
Target:  5'- gGCCuACCACuUCAagucggaucuCGCGCGGCUGCaGCg -3'
miRNA:   3'- -CGGcUGGUGuAGU----------GCGCGCCGGCG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.