miRNA display CGI


Results 1 - 20 of 348 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28125 5' -60.4 NC_005887.1 + 42194 0.67 0.346785
Target:  5'- cGCUGGCUcgucGCAUUgcuGCGCGCGGUUuuuCGCa -3'
miRNA:   3'- -CGGCUGG----UGUAG---UGCGCGCCGGc--GCG- -5'
28125 5' -60.4 NC_005887.1 + 42093 0.69 0.265763
Target:  5'- cGCCuuguaCGCAUCGCGCGCcGCgGCGa -3'
miRNA:   3'- -CGGcug--GUGUAGUGCGCGcCGgCGCg -5'
28125 5' -60.4 NC_005887.1 + 42066 0.73 0.134684
Target:  5'- cGCCGACUGgAUCGacgaGCGCuGUCGCGUg -3'
miRNA:   3'- -CGGCUGGUgUAGUg---CGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 42022 0.67 0.346785
Target:  5'- cGCCGcGCaCGCAcCACGCGagcacGCCGgGCa -3'
miRNA:   3'- -CGGC-UG-GUGUaGUGCGCgc---CGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 42005 0.69 0.279269
Target:  5'- uGCgGcCCACGUCGaguguCGcCGCGGC-GCGCg -3'
miRNA:   3'- -CGgCuGGUGUAGU-----GC-GCGCCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 41900 0.68 0.323047
Target:  5'- cGCCG-CCAgAU--CGCGUGGUCGuCGCc -3'
miRNA:   3'- -CGGCuGGUgUAguGCGCGCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 41726 0.67 0.346785
Target:  5'- uCCGGCUcgccaACGUagacgaaGCGUGC-GCCGCGCa -3'
miRNA:   3'- cGGCUGG-----UGUAg------UGCGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 41665 0.74 0.111245
Target:  5'- cGCCGGCCGCcgCACcUG-GGCCGcCGCu -3'
miRNA:   3'- -CGGCUGGUGuaGUGcGCgCCGGC-GCG- -5'
28125 5' -60.4 NC_005887.1 + 41617 0.71 0.180788
Target:  5'- cGCUGGCUgACuUCGCGUGCGcGCCgaGCGCc -3'
miRNA:   3'- -CGGCUGG-UGuAGUGCGCGC-CGG--CGCG- -5'
28125 5' -60.4 NC_005887.1 + 41599 0.67 0.346785
Target:  5'- cGgCGGCC-CAggUGCG-GCGGCCgGCGCg -3'
miRNA:   3'- -CgGCUGGuGUa-GUGCgCGCCGG-CGCG- -5'
28125 5' -60.4 NC_005887.1 + 41355 0.68 0.323047
Target:  5'- cCCGGCgGCAgCA-GCGCGcCCGUGCg -3'
miRNA:   3'- cGGCUGgUGUaGUgCGCGCcGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 41307 0.67 0.337938
Target:  5'- cGCCGggcaaggaacACCGCAUCACGgucgugaCGcCGGuugaguacgauCCGCGCg -3'
miRNA:   3'- -CGGC----------UGGUGUAGUGC-------GC-GCC-----------GGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 41278 0.69 0.259211
Target:  5'- cGUCGACCuGCG-CACGgGCGcGCUGCuGCc -3'
miRNA:   3'- -CGGCUGG-UGUaGUGCgCGC-CGGCG-CG- -5'
28125 5' -60.4 NC_005887.1 + 41192 0.69 0.259211
Target:  5'- cGCCuGGCUGCAUCcgaccCGCGCGucGUCGUGCc -3'
miRNA:   3'- -CGG-CUGGUGUAGu----GCGCGC--CGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 40912 0.68 0.293316
Target:  5'- cGCCGaagGCUACcgCGCGCGCaccgaguucGGCaacgccgaGCGCa -3'
miRNA:   3'- -CGGC---UGGUGuaGUGCGCG---------CCGg-------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 40834 0.75 0.099622
Target:  5'- cGCCGGCUcgGCG--GCGCGCGGC-GCGCc -3'
miRNA:   3'- -CGGCUGG--UGUagUGCGCGCCGgCGCG- -5'
28125 5' -60.4 NC_005887.1 + 40753 0.76 0.086703
Target:  5'- aGgCGAUCGCcgUugGCGC-GCCGCGCg -3'
miRNA:   3'- -CgGCUGGUGuaGugCGCGcCGGCGCG- -5'
28125 5' -60.4 NC_005887.1 + 40748 0.73 0.151664
Target:  5'- aGCCGugCGCG-CGCGCcaggugcaggaugguGCGGCCggugaucgGCGCg -3'
miRNA:   3'- -CGGCugGUGUaGUGCG---------------CGCCGG--------CGCG- -5'
28125 5' -60.4 NC_005887.1 + 40668 0.67 0.331608
Target:  5'- aCCGGCCGCAccauccugcaccuggCGCGCGCgcacGGCUG-GCa -3'
miRNA:   3'- cGGCUGGUGUa--------------GUGCGCG----CCGGCgCG- -5'
28125 5' -60.4 NC_005887.1 + 40600 0.77 0.073302
Target:  5'- cGCCaGACCGuCGUCGCuGcCGCGcGCCGCGUg -3'
miRNA:   3'- -CGG-CUGGU-GUAGUG-C-GCGC-CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.