Results 41 - 60 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 14310 | 0.67 | 0.305261 |
Target: 5'- aGAcCGGCGGCaagaUCGGaugccgcgccgaacaGCGCGGCGCc -3' miRNA: 3'- aCUaGUCGUCG----AGCCg--------------CGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 27716 | 0.67 | 0.304506 |
Target: 5'- cGcgCGGCAGCUCaGCGCGCAc---- -3' miRNA: 3'- aCuaGUCGUCGAGcCGCGCGUcgcgc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 12823 | 0.67 | 0.304506 |
Target: 5'- cGA-CGGCGGUguucUCGcGUugcaGCGCGGCGCGa -3' miRNA: 3'- aCUaGUCGUCG----AGC-CG----CGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 9919 | 0.68 | 0.297038 |
Target: 5'- cGAUguGCGGCgcgCGGCGUucagguugGCcGCGCu -3' miRNA: 3'- aCUAguCGUCGa--GCCGCG--------CGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 16332 | 0.68 | 0.297038 |
Target: 5'- cGAUCuGCugcaucAGCUCGGCGaCGguGCcCGu -3' miRNA: 3'- aCUAGuCG------UCGAGCCGC-GCguCGcGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32645 | 0.68 | 0.2963 |
Target: 5'- gUGAUCGaccguguGCAGCUcacCGGUgucGCGCGuGCGCGc -3' miRNA: 3'- -ACUAGU-------CGUCGA---GCCG---CGCGU-CGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 5811 | 0.68 | 0.2963 |
Target: 5'- aGA-CGGCGGCgaucgagUCGGCGCGgGuCGCGa -3' miRNA: 3'- aCUaGUCGUCG-------AGCCGCGCgUcGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 31478 | 0.68 | 0.292627 |
Target: 5'- -cGUCAGCacAGUUCGuagucaccgauugccGCGCGCgcGGCGCGg -3' miRNA: 3'- acUAGUCG--UCGAGC---------------CGCGCG--UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 14691 | 0.68 | 0.289714 |
Target: 5'- cGAUCGggcucgucGCGGCg-GGCGgGCcgGGCGCGg -3' miRNA: 3'- aCUAGU--------CGUCGagCCGCgCG--UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 28203 | 0.68 | 0.289714 |
Target: 5'- cGcAUCAGCGccgcgcGuCUCGGCGguuuugaGCAGCGCGc -3' miRNA: 3'- aC-UAGUCGU------C-GAGCCGCg------CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 2526 | 0.68 | 0.289714 |
Target: 5'- -cGUCAGCGcCUcgucgaCGGCGcCGUAGCGCGc -3' miRNA: 3'- acUAGUCGUcGA------GCCGC-GCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 14951 | 0.68 | 0.289714 |
Target: 5'- ---gUAGCAGCUgGcgcauucugccGCGCGguGCGCGc -3' miRNA: 3'- acuaGUCGUCGAgC-----------CGCGCguCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 618 | 0.68 | 0.289714 |
Target: 5'- cGGUCuucGCgcuguauccGGCgCGGCGCGCGGCGg- -3' miRNA: 3'- aCUAGu--CG---------UCGaGCCGCGCGUCGCgc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 41592 | 0.68 | 0.282531 |
Target: 5'- cGGcCAGCGGCggcccaGGUGCGgcggcCGGCGCGg -3' miRNA: 3'- aCUaGUCGUCGag----CCGCGC-----GUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 40763 | 0.68 | 0.281821 |
Target: 5'- cGAUCGGCuccugccAGC-CGuGCGCGC-GCGCc -3' miRNA: 3'- aCUAGUCG-------UCGaGC-CGCGCGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 17359 | 0.68 | 0.275491 |
Target: 5'- cGAacCGGC-GUUUGcGCGCGCGGCGCc -3' miRNA: 3'- aCUa-GUCGuCGAGC-CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 23472 | 0.68 | 0.275491 |
Target: 5'- cUGAUCGacgcGCuGCUgCGGCuGCcagcgGCAGCGCGa -3' miRNA: 3'- -ACUAGU----CGuCGA-GCCG-CG-----CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 31701 | 0.68 | 0.275491 |
Target: 5'- -cGUCGGCAGaacCUCGgacGCGUGCGGCGUu -3' miRNA: 3'- acUAGUCGUC---GAGC---CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 28281 | 0.68 | 0.268591 |
Target: 5'- -cAUCGGCAcGC-CGagcGCGCGCAGCGUc -3' miRNA: 3'- acUAGUCGU-CGaGC---CGCGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 27559 | 0.68 | 0.261832 |
Target: 5'- aUGGUguGCAGCacgcagCGGaaguacaGCGCgAGCGCGc -3' miRNA: 3'- -ACUAguCGUCGa-----GCCg------CGCG-UCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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