Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28126 | 3' | -60 | NC_005887.1 | + | 41951 | 0.7 | 0.2071 |
Target: 5'- ---cCGGCGuGCUCGcguggugcGUGCGCGGCGCGc -3' miRNA: 3'- acuaGUCGU-CGAGC--------CGCGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 35715 | 0.7 | 0.20167 |
Target: 5'- aGAUCcacgcguGCAGCUCGGU-CGCGGuCGUGg -3' miRNA: 3'- aCUAGu------CGUCGAGCCGcGCGUC-GCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 302 | 0.74 | 0.107168 |
Target: 5'- gUGAUCAGCgaGGCcgCGGUGCGC-GCGUa -3' miRNA: 3'- -ACUAGUCG--UCGa-GCCGCGCGuCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 14380 | 0.75 | 0.093024 |
Target: 5'- cGAgucGCcGCUCGGCGCGC-GCGCGu -3' miRNA: 3'- aCUaguCGuCGAGCCGCGCGuCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 13617 | 0.75 | 0.093024 |
Target: 5'- ----uGGCAGCgCGGCGCGCGGCGg- -3' miRNA: 3'- acuagUCGUCGaGCCGCGCGUCGCgc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 34691 | 0.75 | 0.09276 |
Target: 5'- cGAgCAGCAGCgggCGGCcgucgucgcgcuuGCGguGCGCGg -3' miRNA: 3'- aCUaGUCGUCGa--GCCG-------------CGCguCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 22253 | 0.76 | 0.071918 |
Target: 5'- cGAUCAGCGaCggUGGCGCGCAGCagGCGa -3' miRNA: 3'- aCUAGUCGUcGa-GCCGCGCGUCG--CGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 41535 | 0.78 | 0.055454 |
Target: 5'- aGAUCcGCGaggcGCUCGGCGCGCA-CGCGa -3' miRNA: 3'- aCUAGuCGU----CGAGCCGCGCGUcGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 23243 | 0.78 | 0.052325 |
Target: 5'- cGAgCGGCGGCggUCGGCGCGCaaaaGGCGCa -3' miRNA: 3'- aCUaGUCGUCG--AGCCGCGCG----UCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 15885 | 0.81 | 0.033762 |
Target: 5'- ---cCAGCAGCUCGGUGCGCucgacGCGCa -3' miRNA: 3'- acuaGUCGUCGAGCCGCGCGu----CGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 31376 | 0.74 | 0.110229 |
Target: 5'- aUGAUCucgacGC-GCUCGGCGUaGCGGUGCGu -3' miRNA: 3'- -ACUAGu----CGuCGAGCCGCG-CGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 33745 | 0.74 | 0.114653 |
Target: 5'- gGAUCAGCGcGC-CGGCcuucacgagcaucugGCGCGGCGUGc -3' miRNA: 3'- aCUAGUCGU-CGaGCCG---------------CGCGUCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30713 | 0.7 | 0.19118 |
Target: 5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3' miRNA: 3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32741 | 0.71 | 0.176345 |
Target: 5'- aGcgCGGC-GCUCGcGUGCGCgccGGCGCGc -3' miRNA: 3'- aCuaGUCGuCGAGC-CGCGCG---UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 32296 | 0.71 | 0.167031 |
Target: 5'- cGAUCgucgGGcCAGC-CGGCGCGCcgcAGUGCGu -3' miRNA: 3'- aCUAG----UC-GUCGaGCCGCGCG---UCGCGC- -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 30757 | 0.72 | 0.14972 |
Target: 5'- -cGUCGGuCAGCUCGaccguGCGCGCGGCGa- -3' miRNA: 3'- acUAGUC-GUCGAGC-----CGCGCGUCGCgc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 14642 | 0.72 | 0.145654 |
Target: 5'- ---aCGGCAGC-CGGCGCGguGCuGCc -3' miRNA: 3'- acuaGUCGUCGaGCCGCGCguCG-CGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 7113 | 0.73 | 0.134055 |
Target: 5'- gUGGUCuaacgaGGCGGggCGGCGCuGCGGCGCc -3' miRNA: 3'- -ACUAG------UCGUCgaGCCGCG-CGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 26072 | 0.73 | 0.134055 |
Target: 5'- cUGGUCAGC-GCgucagCGGCccGCGCGGCGUu -3' miRNA: 3'- -ACUAGUCGuCGa----GCCG--CGCGUCGCGc -5' |
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28126 | 3' | -60 | NC_005887.1 | + | 25495 | 0.73 | 0.130381 |
Target: 5'- ---gCGGCGGCUCGGacgaugGCGCGGCGgGu -3' miRNA: 3'- acuaGUCGUCGAGCCg-----CGCGUCGCgC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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