miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 41951 0.7 0.2071
Target:  5'- ---cCGGCGuGCUCGcguggugcGUGCGCGGCGCGc -3'
miRNA:   3'- acuaGUCGU-CGAGC--------CGCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 26072 0.73 0.134055
Target:  5'- cUGGUCAGC-GCgucagCGGCccGCGCGGCGUu -3'
miRNA:   3'- -ACUAGUCGuCGa----GCCG--CGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 7113 0.73 0.134055
Target:  5'- gUGGUCuaacgaGGCGGggCGGCGCuGCGGCGCc -3'
miRNA:   3'- -ACUAG------UCGUCgaGCCGCG-CGUCGCGc -5'
28126 3' -60 NC_005887.1 + 14642 0.72 0.145654
Target:  5'- ---aCGGCAGC-CGGCGCGguGCuGCc -3'
miRNA:   3'- acuaGUCGUCGaGCCGCGCguCG-CGc -5'
28126 3' -60 NC_005887.1 + 30757 0.72 0.14972
Target:  5'- -cGUCGGuCAGCUCGaccguGCGCGCGGCGa- -3'
miRNA:   3'- acUAGUC-GUCGAGC-----CGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 32296 0.71 0.167031
Target:  5'- cGAUCgucgGGcCAGC-CGGCGCGCcgcAGUGCGu -3'
miRNA:   3'- aCUAG----UC-GUCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 32741 0.71 0.176345
Target:  5'- aGcgCGGC-GCUCGcGUGCGCgccGGCGCGc -3'
miRNA:   3'- aCuaGUCGuCGAGC-CGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 30713 0.7 0.19118
Target:  5'- gUGcgCgAGCAGCUUGuCGCGCuGCGUGg -3'
miRNA:   3'- -ACuaG-UCGUCGAGCcGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 35715 0.7 0.20167
Target:  5'- aGAUCcacgcguGCAGCUCGGU-CGCGGuCGUGg -3'
miRNA:   3'- aCUAGu------CGUCGAGCCGcGCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 25495 0.73 0.130381
Target:  5'- ---gCGGCGGCUCGGacgaugGCGCGGCGgGu -3'
miRNA:   3'- acuaGUCGUCGAGCCg-----CGCGUCGCgC- -5'
28126 3' -60 NC_005887.1 + 33745 0.74 0.114653
Target:  5'- gGAUCAGCGcGC-CGGCcuucacgagcaucugGCGCGGCGUGc -3'
miRNA:   3'- aCUAGUCGU-CGaGCCG---------------CGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 31376 0.74 0.110229
Target:  5'- aUGAUCucgacGC-GCUCGGCGUaGCGGUGCGu -3'
miRNA:   3'- -ACUAGu----CGuCGAGCCGCG-CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15885 0.81 0.033762
Target:  5'- ---cCAGCAGCUCGGUGCGCucgacGCGCa -3'
miRNA:   3'- acuaGUCGUCGAGCCGCGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 23243 0.78 0.052325
Target:  5'- cGAgCGGCGGCggUCGGCGCGCaaaaGGCGCa -3'
miRNA:   3'- aCUaGUCGUCG--AGCCGCGCG----UCGCGc -5'
28126 3' -60 NC_005887.1 + 41535 0.78 0.055454
Target:  5'- aGAUCcGCGaggcGCUCGGCGCGCA-CGCGa -3'
miRNA:   3'- aCUAGuCGU----CGAGCCGCGCGUcGCGC- -5'
28126 3' -60 NC_005887.1 + 22253 0.76 0.071918
Target:  5'- cGAUCAGCGaCggUGGCGCGCAGCagGCGa -3'
miRNA:   3'- aCUAGUCGUcGa-GCCGCGCGUCG--CGC- -5'
28126 3' -60 NC_005887.1 + 34691 0.75 0.09276
Target:  5'- cGAgCAGCAGCgggCGGCcgucgucgcgcuuGCGguGCGCGg -3'
miRNA:   3'- aCUaGUCGUCGa--GCCG-------------CGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 13617 0.75 0.093024
Target:  5'- ----uGGCAGCgCGGCGCGCGGCGg- -3'
miRNA:   3'- acuagUCGUCGaGCCGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 14380 0.75 0.093024
Target:  5'- cGAgucGCcGCUCGGCGCGC-GCGCGu -3'
miRNA:   3'- aCUaguCGuCGAGCCGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 302 0.74 0.107168
Target:  5'- gUGAUCAGCgaGGCcgCGGUGCGC-GCGUa -3'
miRNA:   3'- -ACUAGUCG--UCGa-GCCGCGCGuCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.