miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 11540 1.07 0.000281
Target:  5'- cUGAUCAGCAGCUCGGCGCGCAGCGCGc -3'
miRNA:   3'- -ACUAGUCGUCGAGCCGCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 15885 0.81 0.033762
Target:  5'- ---cCAGCAGCUCGGUGCGCucgacGCGCa -3'
miRNA:   3'- acuaGUCGUCGAGCCGCGCGu----CGCGc -5'
28126 3' -60 NC_005887.1 + 40227 0.81 0.03416
Target:  5'- -cGUCGcGCAGCUcacacgcggcgagcgCGGCGCGCAGCGCGc -3'
miRNA:   3'- acUAGU-CGUCGA---------------GCCGCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 28603 0.79 0.043936
Target:  5'- --uUCAGCAGCcCGGCGCGCgugAGCGUGc -3'
miRNA:   3'- acuAGUCGUCGaGCCGCGCG---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 23243 0.78 0.052325
Target:  5'- cGAgCGGCGGCggUCGGCGCGCaaaaGGCGCa -3'
miRNA:   3'- aCUaGUCGUCG--AGCCGCGCG----UCGCGc -5'
28126 3' -60 NC_005887.1 + 41535 0.78 0.055454
Target:  5'- aGAUCcGCGaggcGCUCGGCGCGCA-CGCGa -3'
miRNA:   3'- aCUAGuCGU----CGAGCCGCGCGUcGCGC- -5'
28126 3' -60 NC_005887.1 + 16019 0.77 0.058763
Target:  5'- cGA-CAGCGGCgugCGGCGCGUggccGGCGCa -3'
miRNA:   3'- aCUaGUCGUCGa--GCCGCGCG----UCGCGc -5'
28126 3' -60 NC_005887.1 + 22253 0.76 0.071918
Target:  5'- cGAUCAGCGaCggUGGCGCGCAGCagGCGa -3'
miRNA:   3'- aCUAGUCGUcGa-GCCGCGCGUCG--CGC- -5'
28126 3' -60 NC_005887.1 + 40838 0.76 0.080661
Target:  5'- cGAcCGcCGGCUCGGCggcGCGCGGCGCGc -3'
miRNA:   3'- aCUaGUcGUCGAGCCG---CGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 34691 0.75 0.09276
Target:  5'- cGAgCAGCAGCgggCGGCcgucgucgcgcuuGCGguGCGCGg -3'
miRNA:   3'- aCUaGUCGUCGa--GCCG-------------CGCguCGCGC- -5'
28126 3' -60 NC_005887.1 + 14074 0.75 0.093024
Target:  5'- ---cCGGCGGUUgcggaGGCGCGCGGCGCa -3'
miRNA:   3'- acuaGUCGUCGAg----CCGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 13617 0.75 0.093024
Target:  5'- ----uGGCAGCgCGGCGCGCGGCGg- -3'
miRNA:   3'- acuagUCGUCGaGCCGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 14380 0.75 0.093024
Target:  5'- cGAgucGCcGCUCGGCGCGC-GCGCGu -3'
miRNA:   3'- aCUaguCGuCGAGCCGCGCGuCGCGC- -5'
28126 3' -60 NC_005887.1 + 29817 0.74 0.103892
Target:  5'- cGAUCAGCucGC-CGGgcaagaccgugcaCGCGCGGCGCGu -3'
miRNA:   3'- aCUAGUCGu-CGaGCC-------------GCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 302 0.74 0.107168
Target:  5'- gUGAUCAGCgaGGCcgCGGUGCGC-GCGUa -3'
miRNA:   3'- -ACUAGUCG--UCGa-GCCGCGCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 3778 0.74 0.107168
Target:  5'- gGAUC-GCGG-UCGGCGCGCGGCuCGa -3'
miRNA:   3'- aCUAGuCGUCgAGCCGCGCGUCGcGC- -5'
28126 3' -60 NC_005887.1 + 18486 0.74 0.110229
Target:  5'- cGAUCAGCGucguGCUgacgaCGGCGcCGCGGCGUa -3'
miRNA:   3'- aCUAGUCGU----CGA-----GCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 15735 0.74 0.110229
Target:  5'- cGGUgAGCuggucgAGCUCGGCGCGCaucugcgacacGGCGCc -3'
miRNA:   3'- aCUAgUCG------UCGAGCCGCGCG-----------UCGCGc -5'
28126 3' -60 NC_005887.1 + 31376 0.74 0.110229
Target:  5'- aUGAUCucgacGC-GCUCGGCGUaGCGGUGCGu -3'
miRNA:   3'- -ACUAGu----CGuCGAGCCGCG-CGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 33745 0.74 0.114653
Target:  5'- gGAUCAGCGcGC-CGGCcuucacgagcaucugGCGCGGCGUGc -3'
miRNA:   3'- aCUAGUCGU-CGaGCCG---------------CGCGUCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.