miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28126 3' -60 NC_005887.1 + 302 0.74 0.107168
Target:  5'- gUGAUCAGCgaGGCcgCGGUGCGC-GCGUa -3'
miRNA:   3'- -ACUAGUCG--UCGa-GCCGCGCGuCGCGc -5'
28126 3' -60 NC_005887.1 + 490 0.71 0.171632
Target:  5'- cGAgcgCAGCaacAGCg-GGCgGCGCGGCGCGu -3'
miRNA:   3'- aCUa--GUCG---UCGagCCG-CGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 618 0.68 0.289714
Target:  5'- cGGUCuucGCgcuguauccGGCgCGGCGCGCGGCGg- -3'
miRNA:   3'- aCUAGu--CG---------UCGaGCCGCGCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 722 0.71 0.186117
Target:  5'- cUGGUCGGCGGUcaugCGcGUGCGCucgccGCGCGc -3'
miRNA:   3'- -ACUAGUCGUCGa---GC-CGCGCGu----CGCGC- -5'
28126 3' -60 NC_005887.1 + 753 0.67 0.32777
Target:  5'- cGAgCAGCAucGaCUCGGCGaGCAGCaGCa -3'
miRNA:   3'- aCUaGUCGU--C-GAGCCGCgCGUCG-CGc -5'
28126 3' -60 NC_005887.1 + 815 0.66 0.396063
Target:  5'- cGAUCaacAGCcauGCUCGcGCGauCGCGGcCGCGa -3'
miRNA:   3'- aCUAG---UCGu--CGAGC-CGC--GCGUC-GCGC- -5'
28126 3' -60 NC_005887.1 + 1466 0.69 0.236173
Target:  5'- cGAgCAGgAGCccgacgccgaCGGCGUGCGGCGCu -3'
miRNA:   3'- aCUaGUCgUCGa---------GCCGCGCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 1757 0.68 0.261832
Target:  5'- cGcgCAGCuugcgcucguGCUCGGgGCGaucgAGCGCGa -3'
miRNA:   3'- aCuaGUCGu---------CGAGCCgCGCg---UCGCGC- -5'
28126 3' -60 NC_005887.1 + 2526 0.68 0.289714
Target:  5'- -cGUCAGCGcCUcgucgaCGGCGcCGUAGCGCGc -3'
miRNA:   3'- acUAGUCGUcGA------GCCGC-GCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 2982 0.69 0.248729
Target:  5'- -----cGCAGCUUGGCG-GCGGCGUc -3'
miRNA:   3'- acuaguCGUCGAGCCGCgCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 3009 0.67 0.312117
Target:  5'- aUGGUC-GCGGC--GGUGcCGCGGCGCu -3'
miRNA:   3'- -ACUAGuCGUCGagCCGC-GCGUCGCGc -5'
28126 3' -60 NC_005887.1 + 3152 0.66 0.387039
Target:  5'- --uUCAuGCGGCcguggUCGGCGUuCAGCGCc -3'
miRNA:   3'- acuAGU-CGUCG-----AGCCGCGcGUCGCGc -5'
28126 3' -60 NC_005887.1 + 3341 0.68 0.261832
Target:  5'- gUGAUCAuggaauccaucGCGGCgacgaaGuuGCGCAGCGCGa -3'
miRNA:   3'- -ACUAGU-----------CGUCGag----CcgCGCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 3778 0.74 0.107168
Target:  5'- gGAUC-GCGG-UCGGCGCGCGGCuCGa -3'
miRNA:   3'- aCUAGuCGUCgAGCCGCGCGUCGcGC- -5'
28126 3' -60 NC_005887.1 + 4436 0.7 0.212656
Target:  5'- aUGGUugCAGCAGCUCGGCaucgucuCGCAGUuCGa -3'
miRNA:   3'- -ACUA--GUCGUCGAGCCGc------GCGUCGcGC- -5'
28126 3' -60 NC_005887.1 + 4695 0.69 0.230096
Target:  5'- uUGAUCgcgccGGCGGCcacCGGCGCcGCGGCGa- -3'
miRNA:   3'- -ACUAG-----UCGUCGa--GCCGCG-CGUCGCgc -5'
28126 3' -60 NC_005887.1 + 5218 0.7 0.196364
Target:  5'- aGcAUCAGCGGCgcgccgaCGuCGgGCAGCGCGg -3'
miRNA:   3'- aC-UAGUCGUCGa------GCcGCgCGUCGCGC- -5'
28126 3' -60 NC_005887.1 + 5406 0.66 0.396063
Target:  5'- gUGAacCGGCGGg-CGGCGcCGCAGCGa- -3'
miRNA:   3'- -ACUa-GUCGUCgaGCCGC-GCGUCGCgc -5'
28126 3' -60 NC_005887.1 + 5811 0.68 0.2963
Target:  5'- aGA-CGGCGGCgaucgagUCGGCGCGgGuCGCGa -3'
miRNA:   3'- aCUaGUCGUCG-------AGCCGCGCgUcGCGC- -5'
28126 3' -60 NC_005887.1 + 7113 0.73 0.134055
Target:  5'- gUGGUCuaacgaGGCGGggCGGCGCuGCGGCGCc -3'
miRNA:   3'- -ACUAG------UCGUCgaGCCGCG-CGUCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.