miRNA display CGI


Results 41 - 60 of 177 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28128 5' -60.6 NC_005887.1 + 34790 0.66 0.343488
Target:  5'- aGGCAACauguACAUCGCcGCGCaccgcaaGCGCGAc -3'
miRNA:   3'- -CCGUUGc---UGUGGCGcCGCG-------CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 14204 0.66 0.341865
Target:  5'- gGGCGcggccucggacaggGCGGCGCCGCGcUGUucgGCGCGGc -3'
miRNA:   3'- -CCGU--------------UGCUGUGGCGCcGCG---CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 27671 0.66 0.341865
Target:  5'- cGGUAucagcgccuucgacACGACGCuCGaCGGCGCGCucGCGc- -3'
miRNA:   3'- -CCGU--------------UGCUGUG-GC-GCCGCGCG--CGCua -5'
28128 5' -60.6 NC_005887.1 + 18360 0.67 0.336228
Target:  5'- gGGCGacuuccgcguagACGGCGCgC-CGGCGCuCGCGAa -3'
miRNA:   3'- -CCGU------------UGCUGUG-GcGCCGCGcGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 11901 0.67 0.336228
Target:  5'- cGGCAACuuCACgGCGGgGCucacgucugGCGUGAa -3'
miRNA:   3'- -CCGUUGcuGUGgCGCCgCG---------CGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 35902 0.67 0.336228
Target:  5'- aGGCGAUGAucuaCGCCgacGCGGCGCacgaggaacacaGCGCGu- -3'
miRNA:   3'- -CCGUUGCU----GUGG---CGCCGCG------------CGCGCua -5'
28128 5' -60.6 NC_005887.1 + 35056 0.67 0.335429
Target:  5'- cGCGAgGuCGCUGCcgucgucGGCGgGCGCGAc -3'
miRNA:   3'- cCGUUgCuGUGGCG-------CCGCgCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 18311 0.67 0.335429
Target:  5'- uGGCGAUGAUcUCGCGGCacuggggGCGCaucgGCGAc -3'
miRNA:   3'- -CCGUUGCUGuGGCGCCG-------CGCG----CGCUa -5'
28128 5' -60.6 NC_005887.1 + 12600 0.67 0.328294
Target:  5'- cGGCcGCGACGCU-CGGCGUGC-UGAc -3'
miRNA:   3'- -CCGuUGCUGUGGcGCCGCGCGcGCUa -5'
28128 5' -60.6 NC_005887.1 + 33865 0.67 0.328294
Target:  5'- cGCGugGugGCCGUGGgucCGCGCuuGGUg -3'
miRNA:   3'- cCGUugCugUGGCGCC---GCGCGcgCUA- -5'
28128 5' -60.6 NC_005887.1 + 2935 0.67 0.328294
Target:  5'- aGCuGCGcaaGCGCCGCGGCacCGcCGCGAc -3'
miRNA:   3'- cCGuUGC---UGUGGCGCCGc-GC-GCGCUa -5'
28128 5' -60.6 NC_005887.1 + 39394 0.67 0.328294
Target:  5'- cGGCGGCGcaACCGUGGuCGCGacCGCGu- -3'
miRNA:   3'- -CCGUUGCugUGGCGCC-GCGC--GCGCua -5'
28128 5' -60.6 NC_005887.1 + 3458 0.67 0.3205
Target:  5'- cGGUAGCG-CGCgGCGaacaGCGUGCGCa-- -3'
miRNA:   3'- -CCGUUGCuGUGgCGC----CGCGCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 30746 0.67 0.3205
Target:  5'- cGCGACuuCGCCGuCGGUcagcucgaccguGCGCGCGGc -3'
miRNA:   3'- cCGUUGcuGUGGC-GCCG------------CGCGCGCUa -5'
28128 5' -60.6 NC_005887.1 + 8777 0.67 0.312845
Target:  5'- cGCGACGAagcgcuuacCGCCGCGGCGgauCGC-CGGg -3'
miRNA:   3'- cCGUUGCU---------GUGGCGCCGC---GCGcGCUa -5'
28128 5' -60.6 NC_005887.1 + 41321 0.67 0.312845
Target:  5'- cGGCGccauugcCGACGCCGagcaGGUGCGUGUGc- -3'
miRNA:   3'- -CCGUu------GCUGUGGCg---CCGCGCGCGCua -5'
28128 5' -60.6 NC_005887.1 + 13268 0.67 0.312845
Target:  5'- aGCAGCGACACaCGuCGGC-CG-GCGGc -3'
miRNA:   3'- cCGUUGCUGUG-GC-GCCGcGCgCGCUa -5'
28128 5' -60.6 NC_005887.1 + 13691 0.67 0.312845
Target:  5'- cGGCugaguGCGGcCGCCGCGcGcCGCGCugccagcaGCGAUg -3'
miRNA:   3'- -CCGu----UGCU-GUGGCGC-C-GCGCG--------CGCUA- -5'
28128 5' -60.6 NC_005887.1 + 33148 0.67 0.312845
Target:  5'- aGCAGcCGACcguGCCGCGGCG-GUGCu-- -3'
miRNA:   3'- cCGUU-GCUG---UGGCGCCGCgCGCGcua -5'
28128 5' -60.6 NC_005887.1 + 30012 0.67 0.312845
Target:  5'- cGGCGcuCGACACCGuCGaucccgagauCGUGCGCGAg -3'
miRNA:   3'- -CCGUu-GCUGUGGC-GCc---------GCGCGCGCUa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.