Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28129 | 5' | -54.5 | NC_005887.1 | + | 1689 | 0.67 | 0.587984 |
Target: 5'- cGCCCcGAg--CACGAGCgcaAGCUGCg -3' miRNA: 3'- uCGGGcCUuaaGUGCUUGg--UCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 2570 | 0.67 | 0.576689 |
Target: 5'- cAGUCCGGGug-CACGAGCaGGCcggGCUc -3' miRNA: 3'- -UCGGGCCUuaaGUGCUUGgUCGa--CGA- -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 3617 | 0.7 | 0.407679 |
Target: 5'- cAGgCCGGAauuGUUCucgGCGAACCAgaggcGCUGCa -3' miRNA: 3'- -UCgGGCCU---UAAG---UGCUUGGU-----CGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 4520 | 0.67 | 0.587984 |
Target: 5'- cAGCCgGGucgaacuGCGAgacgauGCCGGCUGCUg -3' miRNA: 3'- -UCGGgCCuuaag--UGCU------UGGUCGACGA- -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 9909 | 0.67 | 0.576689 |
Target: 5'- cGCgCGGcGUUCAgGuuggccgcgcuGACCGGCUGCg -3' miRNA: 3'- uCGgGCCuUAAGUgC-----------UUGGUCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 11458 | 0.66 | 0.667589 |
Target: 5'- cGGCgCCGGccgccaGCGcuCCGGCUGCg -3' miRNA: 3'- -UCG-GGCCuuaag-UGCuuGGUCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 12829 | 1.08 | 0.000808 |
Target: 5'- gAGCCCGGAAUUCACGAACCAGCUGCUg -3' miRNA: 3'- -UCGGGCCUUAAGUGCUUGGUCGACGA- -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 12890 | 0.72 | 0.303111 |
Target: 5'- uGGUUCGuGAAUUC-CGGGCuCAGCUGCUu -3' miRNA: 3'- -UCGGGC-CUUAAGuGCUUG-GUCGACGA- -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 13368 | 0.68 | 0.521122 |
Target: 5'- gAGCCCGGcGAUggcgcUCGCGcugaaGGCCGGCgcgGCg -3' miRNA: 3'- -UCGGGCC-UUA-----AGUGC-----UUGGUCGa--CGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 15717 | 0.66 | 0.656233 |
Target: 5'- cGCCggcgugaaGGAGcUgACGcGCCAGCUGCa -3' miRNA: 3'- uCGGg-------CCUUaAgUGCuUGGUCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 15981 | 0.7 | 0.427175 |
Target: 5'- cGGCCCgcgcGGAAcgCAgGucgGCCAGCUGCg -3' miRNA: 3'- -UCGGG----CCUUaaGUgCu--UGGUCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 17172 | 0.67 | 0.576689 |
Target: 5'- aGGCgUGGGAgcgCGCGAACgCGGCcGCa -3' miRNA: 3'- -UCGgGCCUUaa-GUGCUUG-GUCGaCGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 18251 | 0.66 | 0.644853 |
Target: 5'- cGCCgGGcaccgUCACGGGCgAGCUGa- -3' miRNA: 3'- uCGGgCCuua--AGUGCUUGgUCGACga -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 18451 | 0.68 | 0.521122 |
Target: 5'- aGGCCaucGggUUCGCGAgcGCCGGC-GCg -3' miRNA: 3'- -UCGGgc-CuuAAGUGCU--UGGUCGaCGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 21361 | 0.67 | 0.565444 |
Target: 5'- uGCCCGuGAAUguggGCGAcGCCAGCaGCg -3' miRNA: 3'- uCGGGC-CUUAag--UGCU-UGGUCGaCGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 21534 | 0.68 | 0.543134 |
Target: 5'- uGCCgGGaAAUUCACGAcgcugcaggcgACCGGC-GCa -3' miRNA: 3'- uCGGgCC-UUAAGUGCU-----------UGGUCGaCGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 22941 | 0.66 | 0.672122 |
Target: 5'- cGGaCCGGua-UCGCGGACCgauacgcucugcggcAGCUGCg -3' miRNA: 3'- -UCgGGCCuuaAGUGCUUGG---------------UCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 25097 | 0.68 | 0.532087 |
Target: 5'- cGCCguCGGAuUUCGCGA-CCGGUUGUc -3' miRNA: 3'- uCGG--GCCUuAAGUGCUuGGUCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 27311 | 0.69 | 0.447213 |
Target: 5'- cGGgCCGGcg--CGCGAugCAGUUGCg -3' miRNA: 3'- -UCgGGCCuuaaGUGCUugGUCGACGa -5' |
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28129 | 5' | -54.5 | NC_005887.1 | + | 28867 | 0.66 | 0.656233 |
Target: 5'- uGCUgaUGGAuUUCGCGAaaGCCgcgaAGCUGCUu -3' miRNA: 3'- uCGG--GCCUuAAGUGCU--UGG----UCGACGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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