miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2813 3' -60.6 NC_001491.2 + 136951 0.88 0.031573
Target:  5'- aGCCACCGCCucuGCGGCUGCCAUUGCUGCa -3'
miRNA:   3'- -UGGUGGUGG---CGCCGAUGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 137621 0.87 0.041129
Target:  5'- gGCCGCCGCCGCGGCagcgGCCGCC-CCGg -3'
miRNA:   3'- -UGGUGGUGGCGCCGa---UGGUGGuGGCg -5'
2813 3' -60.6 NC_001491.2 + 145772 0.85 0.054915
Target:  5'- aGCCGCCGCCGgGGCcgaugcugcUGCUGCCGCCGCc -3'
miRNA:   3'- -UGGUGGUGGCgCCG---------AUGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 74039 0.81 0.099618
Target:  5'- cGCCGCCGCCGCagcagcccucGCUcccgccgcGCCGCCGCCGCa -3'
miRNA:   3'- -UGGUGGUGGCGc---------CGA--------UGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 74231 0.81 0.099618
Target:  5'- cGCCGCCGCCGCagcagcccucGCUcccgccgcGCCGCCGCCGCa -3'
miRNA:   3'- -UGGUGGUGGCGc---------CGA--------UGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 74167 0.81 0.099618
Target:  5'- cGCCGCCGCCGCagcagcccucGCUcccgccgcGCCGCCGCCGCa -3'
miRNA:   3'- -UGGUGGUGGCGc---------CGA--------UGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 74103 0.81 0.099618
Target:  5'- cGCCGCCGCCGCagcagcccucGCUcccgccgcGCCGCCGCCGCa -3'
miRNA:   3'- -UGGUGGUGGCGc---------CGA--------UGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 125609 0.81 0.110301
Target:  5'- cCCGCC-CCGgGGCgGCCGCUGCCGCg -3'
miRNA:   3'- uGGUGGuGGCgCCGaUGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 67906 0.8 0.113135
Target:  5'- cACCAUCACCGC-GCUGCUGCUGCUGCg -3'
miRNA:   3'- -UGGUGGUGGCGcCGAUGGUGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 82629 0.8 0.113135
Target:  5'- aGCCugCACCGCGcGC-GCUACCAgCCGCg -3'
miRNA:   3'- -UGGugGUGGCGC-CGaUGGUGGU-GGCG- -5'
2813 3' -60.6 NC_001491.2 + 116848 0.8 0.119009
Target:  5'- cUCGCCGCCGUggccGGCUACCcggcccagGCCGCCGCu -3'
miRNA:   3'- uGGUGGUGGCG----CCGAUGG--------UGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 45245 0.8 0.127709
Target:  5'- gGCCGCCgcagauuuggccgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- -UGGUGG---------------UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 45179 0.8 0.127709
Target:  5'- gGCCGCCgcagauuuggccgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- -UGGUGG---------------UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 125510 0.8 0.128353
Target:  5'- gGCCGCCGCCGCGaC-GCCGCC-CCGCc -3'
miRNA:   3'- -UGGUGGUGGCGCcGaUGGUGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 125199 0.79 0.131286
Target:  5'- aGCCGCCACCGcCGGC-ACCGaggucuuCCGCUGCg -3'
miRNA:   3'- -UGGUGGUGGC-GCCGaUGGU-------GGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 139717 0.79 0.134954
Target:  5'- cGCCacgcaGCCGCCGCGGCgUACCugCGcgcCCGCg -3'
miRNA:   3'- -UGG-----UGGUGGCGCCG-AUGGugGU---GGCG- -5'
2813 3' -60.6 NC_001491.2 + 116987 0.78 0.168266
Target:  5'- gGCCcuGCCACaCGCGGCcGCCucgguggccaugaGCCGCCGCu -3'
miRNA:   3'- -UGG--UGGUG-GCGCCGaUGG-------------UGGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 114949 0.77 0.177135
Target:  5'- cGCCugCGCCGUGcGCUggccccgggagcGCCACCucaGCCGCg -3'
miRNA:   3'- -UGGugGUGGCGC-CGA------------UGGUGG---UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 115488 0.77 0.181503
Target:  5'- gGCCACCAUCGCGGC--CCGCUGCaGCg -3'
miRNA:   3'- -UGGUGGUGGCGCCGauGGUGGUGgCG- -5'
2813 3' -60.6 NC_001491.2 + 146503 0.77 0.199939
Target:  5'- gGCCGCgGCCGCGGCaGCCuugcgucgggGCCcgaggGCCGCg -3'
miRNA:   3'- -UGGUGgUGGCGCCGaUGG----------UGG-----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.