miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2813 3' -60.6 NC_001491.2 + 1790 0.71 0.418731
Target:  5'- cGCCGuCCAcgcCCGCGGCcGCUcuGCC-CCGCg -3'
miRNA:   3'- -UGGU-GGU---GGCGCCGaUGG--UGGuGGCG- -5'
2813 3' -60.6 NC_001491.2 + 2311 0.68 0.585632
Target:  5'- aAUCACCGCgggGCGGCcgcACUACCAUCGg -3'
miRNA:   3'- -UGGUGGUGg--CGCCGa--UGGUGGUGGCg -5'
2813 3' -60.6 NC_001491.2 + 4903 0.66 0.742203
Target:  5'- uGCgACCACCaGCGGCUGUCugaCGUCGCg -3'
miRNA:   3'- -UGgUGGUGG-CGCCGAUGGug-GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 7138 0.71 0.401956
Target:  5'- cACCGCCuauGCCGCGuuUACCAucugguauacccUCACCGCc -3'
miRNA:   3'- -UGGUGG---UGGCGCcgAUGGU------------GGUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 9938 0.67 0.664733
Target:  5'- uACCGCCAgaaGCGGacgaACCGCagcaGCCGCc -3'
miRNA:   3'- -UGGUGGUgg-CGCCga--UGGUGg---UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 14346 0.73 0.310035
Target:  5'- aGCCGCUuCCGCGaaGCUGCCGCUuggcgcuGCCGUa -3'
miRNA:   3'- -UGGUGGuGGCGC--CGAUGGUGG-------UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 18334 0.68 0.585632
Target:  5'- gGCCAUCACaGCGGCauCCAUaaCAUCGCu -3'
miRNA:   3'- -UGGUGGUGgCGCCGauGGUG--GUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 21246 0.66 0.72321
Target:  5'- aACCGCCACCGUcgaugcucaGGCUccccccuuACCAacgaaaACCGUu -3'
miRNA:   3'- -UGGUGGUGGCG---------CCGA--------UGGUgg----UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 21688 0.66 0.742203
Target:  5'- -gCAUCAUCGCaGUUACUugCgggGCCGCg -3'
miRNA:   3'- ugGUGGUGGCGcCGAUGGugG---UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 29636 0.69 0.556305
Target:  5'- -gUACC-CCGgGGUUACCcucGCCaACCGCa -3'
miRNA:   3'- ugGUGGuGGCgCCGAUGG---UGG-UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 29960 0.69 0.527416
Target:  5'- uGCCGCUcugggucgcGCgGCGGCgACUGCCACCa- -3'
miRNA:   3'- -UGGUGG---------UGgCGCCGaUGGUGGUGGcg -5'
2813 3' -60.6 NC_001491.2 + 37200 0.72 0.377609
Target:  5'- -aCAUCACCGUGGCgauaCACCGCCa- -3'
miRNA:   3'- ugGUGGUGGCGCCGaug-GUGGUGGcg -5'
2813 3' -60.6 NC_001491.2 + 41294 0.75 0.247425
Target:  5'- uCCGCgGCCuuuGCGGCUuCCACCACCucGCg -3'
miRNA:   3'- uGGUGgUGG---CGCCGAuGGUGGUGG--CG- -5'
2813 3' -60.6 NC_001491.2 + 41385 0.71 0.41029
Target:  5'- gGCCuuguCCAgCGCGGCUGCCACacuUUGUg -3'
miRNA:   3'- -UGGu---GGUgGCGCCGAUGGUGgu-GGCG- -5'
2813 3' -60.6 NC_001491.2 + 42554 0.67 0.625144
Target:  5'- -gCACUGCCGCGuaUAUCuCgGCCGCa -3'
miRNA:   3'- ugGUGGUGGCGCcgAUGGuGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 43051 0.71 0.444673
Target:  5'- gGCUAUCuuUGCGGCcGCCGCCcguCCGCu -3'
miRNA:   3'- -UGGUGGugGCGCCGaUGGUGGu--GGCG- -5'
2813 3' -60.6 NC_001491.2 + 45179 0.8 0.127709
Target:  5'- gGCCGCCgcagauuuggccgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- -UGGUGG---------------UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 45245 0.8 0.127709
Target:  5'- gGCCGCCgcagauuuggccgggGCCGCGGCggggGCCGCCgcagauuuggccgggGCCGCg -3'
miRNA:   3'- -UGGUGG---------------UGGCGCCGa---UGGUGG---------------UGGCG- -5'
2813 3' -60.6 NC_001491.2 + 49506 0.68 0.575817
Target:  5'- uCCGCCauACCGaGGCcgGCCAUgGCCGUu -3'
miRNA:   3'- uGGUGG--UGGCgCCGa-UGGUGgUGGCG- -5'
2813 3' -60.6 NC_001491.2 + 51259 0.68 0.585632
Target:  5'- gGCCugguCCcCCuggGCGGCUGCCGCCAgCa- -3'
miRNA:   3'- -UGGu---GGuGG---CGCCGAUGGUGGUgGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.